Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq11 149 9e-31 seq6 129 9e-25 >seq11 Length=827760 Score = 149 bits (164), Expect = 9e-31 Identities = 313/463 (68%), Gaps = 8/463 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| |||| | || ||||||||||| || Sbjct 610720 CAGGGTGGCAACAAGCGTCCCGGTGCTTTTGCCATCTATCTCGAGCCTTGGCACGCCGAT 610661 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || |||||| | || |||| || ||| |||| ||||||| || ||| | ||| Sbjct 610660 GTCTTCGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGAAGAGGTCCGCGCCCGTGAC 610601 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT---CAACGACGGTGGC 97052 | || ||| || ||| | || ||| | ||||||||| | || || |||| | Sbjct 610600 CTTTTCCTTGCTCTTTGGATCCCTGATCTCTTCATGAAGAGAGTAGAAAAGAACGGAG-- 610543 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || ||||||||| | || || ||||| |||| |||| || || ||| Sbjct 610542 -ACTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTTGCCGACTGCTACGGTGAGGAG 610484 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGC 97171 || |||||| ||| | ||||| || |||| | || |||| | | || Sbjct 610483 TTCGAGGCCTTATACGAGAAGTACGAACAGATGGGCAAGGGTCGCAAGAC-TCTTAAGGC 610425 Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | | | || ||| | |||||| | |||||| ||||| || | || | ||| || Sbjct 610424 CCAAAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAACCCCTTCATGCT 610365 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 |||||||||| | | || ||||| |||||||| || |||| |||||| |||| Sbjct 610364 CTACAAGGATGCTGCCAACCGCAAAAGCAACCAGAAGAACCTGGGTACCATCCGTAGCTC 610305 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||| || ||||| || || | |||||| || | || |||||| Sbjct 610304 CAACCTCTGCACTGAGATCATTGAGTACTCCGCGCCTGACGAG 610262 >seq6 Length=1110370 Score = 129 bits (142), Expect = 9e-25 Identities = 312/465 (67%), Gaps = 27/465 (6%) Strand=Plus/Plus Query 125400 GACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459 || || ||||| || | ||| | | |||| || ||||| || || ||||| || ||| Sbjct 71074 GATGAGAAGTCCTCCTTCGCTCAGCGTTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTC 71133 Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519 || ||| || || ||||||| ||||||||||||||||| ||||||||||| ||| Sbjct 71134 TTCAGTGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTG 71193 Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTA 125579 || | |||||| | || ||||| |||||||| || ||| ||||| ||| || Sbjct 71194 ACATTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTC 71253 Query 125580 CTGT-TTCGCAACT--ATCTGCGTCCC-GAGTGCAGATCCAGCGATGAAAAGGTCATCAA 125635 |||| || || || | || ||| | |||| | | ||| || || Sbjct 71254 CTGTACTCCCACCTCAAGAACCGCCCCAGCAAGCAGGT-TATCGAGGA---------CAT 71303 Query 125636 CATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAG 125695 |||||| ||||||||| | ||| || || ||||| || || || |||| || | Sbjct 71304 CATTGT---CGATGCCGTCAAGATTGAGCAGGAGTTCCTGACGGAGGCCCTTCCTTGCGC 71360 Query 125696 CATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCT 125755 | || |||||||||||| ||| || ||| ||||||| ||||| || || || || || Sbjct 71361 CCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCT 71420 Query 125756 ACTGTACGAGTTG--ATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTC 125810 || |||| ||||| || |||| ||||||| | || ||||| || || Sbjct 71421 CTTG-----GTTGCTCTTGGCAACGACAAGGTTTACAAGTCTTCCAACCCCTTCGACTTT 71475 Query 125811 ATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 ||| | || || || | || ||||||||||| || || ||| Sbjct 71476 ATGGAGAATATCTCCCTGGGTGGCAAGACCAACTTCTTTGAAAAG 71520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054123744480