Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq11 149 9e-31
seq6 129 9e-25
>seq11
Length=827760
Score = 149 bits (164), Expect = 9e-31
Identities = 313/463 (68%), Gaps = 8/463 (2%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || ||| | ||| |||| | || ||||||||||| ||
Sbjct 610720 CAGGGTGGCAACAAGCGTCCCGGTGCTTTTGCCATCTATCTCGAGCCTTGGCACGCCGAT 610661
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || |||||| | || |||| || ||| |||| ||||||| || ||| | |||
Sbjct 610660 GTCTTCGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGAAGAGGTCCGCGCCCGTGAC 610601
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT---CAACGACGGTGGC 97052
| || ||| || ||| | || ||| | ||||||||| | || || |||| |
Sbjct 610600 CTTTTCCTTGCTCTTTGGATCCCTGATCTCTTCATGAAGAGAGTAGAAAAGAACGGAG-- 610543
Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112
|||||| || ||||||||| | || || ||||| |||| |||| || || |||
Sbjct 610542 -ACTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTTGCCGACTGCTACGGTGAGGAG 610484
Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGC 97171
|| |||||| ||| | ||||| || |||| | || |||| | | ||
Sbjct 610483 TTCGAGGCCTTATACGAGAAGTACGAACAGATGGGCAAGGGTCGCAAGAC-TCTTAAGGC 610425
Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231
| | | || ||| | |||||| | |||||| ||||| || | || | ||| ||
Sbjct 610424 CCAAAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAACCCCTTCATGCT 610365
Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291
|||||||||| | | || ||||| |||||||| || |||| |||||| ||||
Sbjct 610364 CTACAAGGATGCTGCCAACCGCAAAAGCAACCAGAAGAACCTGGGTACCATCCGTAGCTC 610305
Query 97292 CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334
||| || ||||| || || | |||||| || | || ||||||
Sbjct 610304 CAACCTCTGCACTGAGATCATTGAGTACTCCGCGCCTGACGAG 610262
>seq6
Length=1110370
Score = 129 bits (142), Expect = 9e-25
Identities = 312/465 (67%), Gaps = 27/465 (6%)
Strand=Plus/Plus
Query 125400 GACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459
|| || ||||| || | ||| | | |||| || ||||| || || ||||| || |||
Sbjct 71074 GATGAGAAGTCCTCCTTCGCTCAGCGTTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTC 71133
Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519
|| ||| || || ||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 71134 TTCAGTGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTG 71193
Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTA 125579
|| | |||||| | || ||||| |||||||| || ||| ||||| ||| ||
Sbjct 71194 ACATTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTC 71253
Query 125580 CTGT-TTCGCAACT--ATCTGCGTCCC-GAGTGCAGATCCAGCGATGAAAAGGTCATCAA 125635
|||| || || || | || ||| | |||| | | ||| || ||
Sbjct 71254 CTGTACTCCCACCTCAAGAACCGCCCCAGCAAGCAGGT-TATCGAGGA---------CAT 71303
Query 125636 CATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAG 125695
|||||| ||||||||| | ||| || || ||||| || || || |||| || |
Sbjct 71304 CATTGT---CGATGCCGTCAAGATTGAGCAGGAGTTCCTGACGGAGGCCCTTCCTTGCGC 71360
Query 125696 CATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCT 125755
| || |||||||||||| ||| || ||| ||||||| ||||| || || || || ||
Sbjct 71361 CCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCT 71420
Query 125756 ACTGTACGAGTTG--ATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTC 125810
|| |||| ||||| || |||| ||||||| | || ||||| || ||
Sbjct 71421 CTTG-----GTTGCTCTTGGCAACGACAAGGTTTACAAGTCTTCCAACCCCTTCGACTTT 71475
Query 125811 ATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
||| | || || || | || ||||||||||| || || |||
Sbjct 71476 ATGGAGAATATCTCCCTGGGTGGCAAGACCAACTTCTTTGAAAAG 71520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741054123744480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |