Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq20 118 9e-22
>seq20
Length=648914
Score = 118 bits (130), Expect = 9e-22
Identities = 180/254 (71%), Gaps = 2/254 (1%)
Strand=Plus/Minus
Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560
||||||||| ||||| ||||| ||||| | | | || || || || |||||
Sbjct 87173 ACGCCCGTGCTGCCGAAGCCGCCGGCGCCGCGCACGCTCTCCTCGAGCTCGGCGACCTCG 87114
Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619
| | |||||| | || |||||| || ||||| || | |||||||||
Sbjct 87113 ACGATCTCGGGGGT-GAAGATGCGCTCCACGACGAGCTGGGCGACGCGGTCGCCCTCAGC 87055
Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679
|||||||| ||| ||| | || |||||| || | || || | ||||||||||||
Sbjct 87054 GACCTCGAAGTCGGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTC 86995
Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739
|||||| || ||||| |||||| ||||||||||| |||| | || ||||||||||| ||
Sbjct 86994 GGCGTCGATGACGCCAGCGCCCGTGTCGATGAAGTTCTTGGCAGCGAGGCCGGAGCGCGG 86935
Query 5740 AGCCACGCGGCCGT 5753
|| | ||||||||
Sbjct 86934 GGCGATGCGGCCGT 86921
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430051527774176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |