Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq20 118 9e-22 >seq20 Length=648914 Score = 118 bits (130), Expect = 9e-22 Identities = 180/254 (71%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||||||| ||||| ||||| ||||| | | | || || || || ||||| Sbjct 87173 ACGCCCGTGCTGCCGAAGCCGCCGGCGCCGCGCACGCTCTCCTCGAGCTCGGCGACCTCG 87114 Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | | |||||| | || |||||| || ||||| || | ||||||||| Sbjct 87113 ACGATCTCGGGGGT-GAAGATGCGCTCCACGACGAGCTGGGCGACGCGGTCGCCCTCAGC 87055 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 |||||||| ||| ||| | || |||||| || | || || | |||||||||||| Sbjct 87054 GACCTCGAAGTCGGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTC 86995 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 |||||| || ||||| |||||| ||||||||||| |||| | || ||||||||||| || Sbjct 86994 GGCGTCGATGACGCCAGCGCCCGTGTCGATGAAGTTCTTGGCAGCGAGGCCGGAGCGCGG 86935 Query 5740 AGCCACGCGGCCGT 5753 || | |||||||| Sbjct 86934 GGCGATGCGGCCGT 86921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430051527774176