Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq10 109 5e-19 seq54 93.3 4e-14 >seq10 Length=843860 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || ||||||||||| | ||| || || | |||| | |||||| Sbjct 383965 CACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTC 383906 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || ||||||| || | ||||||||| ||||| || ||||| ||||| | Sbjct 383905 AAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGGATGCCTTCCTTGTCCTG 383846 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || | |||||| | ||| || |||| | || || || | |||||||| || Sbjct 383845 AATCTTAGACTTGACATTGTCGATGGTATCAGAGGACTCAACCTCGAGAGTGATGGTCTT 383786 Query 94978 TCCAGTAAGAGTTTTCAC 94995 |||||||| || || || Sbjct 383785 GCCAGTAAGGGTCTTGAC 383768 Score = 100 bits (110), Expect = 3e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| | || || | || | ||| | ||| || ||||| || | ||| | Sbjct 384218 TTTGCATACCTCCACGCAGACGAAGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGT 384159 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || |||| ||| |||||||| |||||| | || || || | ||||| | Sbjct 384158 AGTCAGACAAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGT 384099 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | |||||||| || || ||||| | ||| || | ||| ||| | ||| ||||| | Sbjct 384098 CGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATCGTGTCCGATG 384039 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | |||||| || |||||||| | || || || ||||||||||| Sbjct 384038 ATTCGACCTCCAGCGTGATTGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 383984 >seq54 Length=312047 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||| | ||| || ||||| || | ||| || ||| || ||| | Sbjct 98798 CGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 98739 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| |||||| | ||||| | | ||||| || || || || || || ||| Sbjct 98738 TCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 98679 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | |||||| | ||| ||||| | || || |||| ||||| Sbjct 98678 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATA 98619 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || || || || ||||| |||||||||||| || Sbjct 98618 GTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATGATT 98580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288129205280