Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq21 107 3e-19
seq6 98.7 2e-16
>seq21
Length=624037
Score = 107 bits (118), Expect = 3e-19
Identities = 86/101 (85%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| | | || || |||||||| || ||||||||||| |||||
Sbjct 27600 GCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 27542
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||||||||| ||||||||||| || ||||||||| ||||||
Sbjct 27541 CCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 27501
Score = 102 bits (112), Expect = 1e-17
Identities = 121/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| |||| |||| | ||| ||||||| || || |||| ||| |
Sbjct 27440 TGATCTACGAGGAGACCCGTGGTGTTCTCAAGTCCTTCCTCGAGGGTGTCATCCGTGACG 27381
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| || |||||||| || || |||||||||||||| ||||| ||||||| |
Sbjct 27380 CCGTCACCTACACAGAGCACGCCAAGCGCAAGACTGTCACCTCTCTGGATGTCGTCTACG 27321
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| |||| || |||||||| | | || ||||| || |||||
Sbjct 27320 CGCTGAAGCGCCAAGGCCGCACCCTCTACGGTTTCGGTGGTTAA 27277
>seq6
Length=1110370
Score = 98.7 bits (108), Expect = 2e-16
Identities = 84/101 (83%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| | | || || |||||||| || ||||||||||| |||||
Sbjct 1051559 GCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCTGCTAT 1051501
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||| ||||| ||||||||||| || ||||||||| | ||||
Sbjct 1051500 CCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATTTCTG 1051460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074698959764
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |