Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq21 107 3e-19 seq6 98.7 2e-16 >seq21 Length=624037 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| | | || || |||||||| || ||||||||||| ||||| Sbjct 27600 GCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 27542 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||||||| ||||||||||| || ||||||||| |||||| Sbjct 27541 CCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 27501 Score = 102 bits (112), Expect = 1e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| |||| | ||| ||||||| || || |||| ||| | Sbjct 27440 TGATCTACGAGGAGACCCGTGGTGTTCTCAAGTCCTTCCTCGAGGGTGTCATCCGTGACG 27381 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| || |||||||| || || |||||||||||||| ||||| ||||||| | Sbjct 27380 CCGTCACCTACACAGAGCACGCCAAGCGCAAGACTGTCACCTCTCTGGATGTCGTCTACG 27321 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| || |||||||| | | || ||||| || ||||| Sbjct 27320 CGCTGAAGCGCCAAGGCCGCACCCTCTACGGTTTCGGTGGTTAA 27277 >seq6 Length=1110370 Score = 98.7 bits (108), Expect = 2e-16 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| | | || || |||||||| || ||||||||||| ||||| Sbjct 1051559 GCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCTGCTAT 1051501 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| ||||||||||| || ||||||||| | |||| Sbjct 1051500 CCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATTTCTG 1051460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074698959764