Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq11 132 6e-26
seq6 109 7e-19
>seq11
Length=827760
Score = 132 bits (146), Expect = 6e-26
Identities = 436/673 (65%), Gaps = 16/673 (2%)
Strand=Plus/Plus
Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227
||||| || |||| || ||||| | | ||| ||||||| | | |||| |||||
Sbjct 610509 CCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATG 610568
Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287
||||||||||| ||||||||||| | || || || | || | || || || ||
Sbjct 610569 AAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCA 610628
Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347
||||| ||||| | || | | | ||| | ||||| || || | || |||
Sbjct 610629 TGGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATG 610688
Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407
|| | | | || || || ||||| || ||||| || | ||| | ||| ||||||||| |
Sbjct 610689 GCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAG 610748
Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467
|| | | ||| |||| |||||||| || | |||||||| |||| || || ||
Sbjct 610749 ACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCG 610808
Query 63468 CTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525
| || || || | ||| ||||| || || || ||||| || ||||| | ||
Sbjct 610809 GTAGCGCGGATGCGGTGGACGTTG--AGACCAATGCCACCAGCCATCTTGGAGATCATTG 610866
Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585
|||| || | ||||| || |||||||| || || || |||||| | || |
Sbjct 610867 CGCAGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGA 610926
Query 63586 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63645
| || ||||| || | || || || || || | |||||||| ||||| |
Sbjct 610927 AGCAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAG 610986
Query 63646 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATCCC 63699
| || | || || | || ||||| ||||| || ||| | || | |||
Sbjct 610987 TGAAGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCC 611046
Query 63700 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63759
| |||| || || ||||||||||| | ||||||||| ||||| || | ||||||
Sbjct 611047 A--GATG----CCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGC 611100
Query 63760 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63819
|| | |||| | ||| ||| | ||||| || || || || || || | ||| |
Sbjct 611101 CGTCAAGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGA 611160
Query 63820 AGTCTCGTTCGTA 63832
|||| || |||||
Sbjct 611161 AGTCGCGGTCGTA 611173
>seq6
Length=1110370
Score = 109 bits (120), Expect = 7e-19
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| ||||| ||| ||||||||||||||| | | || || |||||||| || || ||
Sbjct 71249 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGA 71190
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|||||||| ||||| ||||| || ||||| || ||||| ||||| | ||| |||||
Sbjct 71189 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAA 71130
Query 33424 ATTCCTTCTACTGCAGCAAAGGCAA 33448
|| || || || ||||| |||||||
Sbjct 71129 ATACCCTCGACAGCAGCGAAGGCAA 71105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622942932811680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |