Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq11 403 5e-107
>seq11
Length=827760
Score = 403 bits (446), Expect = 5e-107
Identities = 1072/1622 (66%), Gaps = 18/1622 (1%)
Strand=Plus/Minus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606
||||| |||||| | || ||| | | ||| ||||| || | | ||||| ||||||||
Sbjct 610990 TTCACTCACGCCTCTCCTACACTCTTCAACGCTGGTACCCCCCAAGCACAGCTGTCTTCT 610931
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| ||| | | ||||| || || || ||||||||||| | ||||| || ||||
Sbjct 610930 TGCTTCCTTGTCGACATGAAAGAGGACTCTATCGAGGGTATTTACGACACCCTCAAGACC 610871
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725
|| || | || ||||||| || || || |||||| | | || ||||| | || ||
Sbjct 610870 TGCGCAATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACG-TCCACCGCATCCGCGC 610812
Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784
|| | | ||||||| |||||| || ||| || || | ||||||||||| |
Sbjct 610811 TACCGG-CTCTTACATTGCCGGCACCAATGGCACCTCCAACGGTATCGTTCCCATGCTCC 610753
Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844
|||| ||| | || ||||| ||||||||||||||||||| ||||| || || |
Sbjct 610752 GTGTCTTTAATAACACTGCTCGGTACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCTT 610693
Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904
|||| || |||||||||||| || |||||| | || || ||| | || || ||||| |
Sbjct 610692 TTGCCATCTATCTCGAGCCTTGGCACGCCGATGTCTTCGACTTTTTAGATCTGCGGAAGA 610633
Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964
|| || || || || | || || ||||| || ||| ||| |||||| | |||| |
Sbjct 610632 ACCATGGCAAGGAAGAGGTCCGCGCCCGTGACCTTTTCCTTGCTCTTTGGATCCCTGATC 610573
Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGA-ATTGGTCACTCTTTTGCCCACACGAATGT 364023
|| |||||| | || || || || | ||| | || | ||||| | || ||
Sbjct 610572 TCTTCATGAAGAGAGTAGA-AAAGAACGGAGACTGGACTCTTATGTGCCCCAATGAGTGC 610514
Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083
|| |||||| |||| | ||||| || | | || ||||||| ||||| ||| |
Sbjct 610513 CCTGGTCTTGCCGACTGCTACGGTGAGGAGTTCGAGGCCTTATACGAGAAGTACGAACAG 610454
Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143
||| |||| ||| ||||| || || || ||||| |||| ||||||| | || |
Sbjct 610453 ATGGGCAAGGGTCGCAAGACTCTTAAGGCCCAAAAGCTCTGGTATGCCATCCTCGAGGCT 610394
Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203
|| | |||||||| | |||| ||| | ||||| ||| | ||||||||| ||||
Sbjct 610393 CAAACCGAGACAGGCAACCCCTTCATGCTCTACAAGGATGCTGCCAACCGCAAAAGCAAC 610334
Query 364204 CAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACAC 364262
||| || |||| ||||| | || | || |||||| || || ||||| ||||| ||| |
Sbjct 610333 CAGAAGAACCTGGGTACCA-TCCGTAGCTCCAACCTCTGCACTGAGATCATTGAGTACTC 610275
Query 364263 CGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT--- 364319
||| || |||||| || || |||||||| || ||| | || | || | || ||
Sbjct 610274 CGCGCCTGACGAGGTCGCTGTGTGTAACCTGGCCTCGCTTGCCTTGCCCACATTCGTTGA 610215
Query 364320 ---AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG 364376
|| || ||| | ||| |||| | || | || || ||| | || | |
Sbjct 610214 CTACAACGAGGGTGTCTACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTCGTTCG 610155
Query 364377 CAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAA 364436
||| ||| ||| | || || || | || || | | || ||| ||
Sbjct 610154 CAACCTCAACAGAATCATTGATGTCAACCACTACCCGGTCCAGGAGGCCCGCAACAGCAA 610095
Query 364437 TATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCT 364496
||||| || ||||| |||||||| ||||| ||||| || || || | || || ||
Sbjct 610094 CATGCGCCACCGCCCCATTGGTCTCGGTGTGCAGGGTCTTGCGGATGCCTTCTTGGCTCT 610035
Query 364497 CAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAAT 364556
| ||| | || || || ||||| ||||||| || || ||| |||| || || |||||
Sbjct 610034 CCGCATGCCCTTCGAGTCTCCTGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACAAT 609975
Query 364557 GTATTTTGCCGCAATGACTGCTTCGTGTG-ATTTGGCAAAAACCAAGGGAAAGTACTCTA 364615
|| ||| || | ||| ||| ||| | ||||| || |||| ||| |
Sbjct 609974 CTACCATGCTGCCCTTACTATGTCG-GTGCAGTTGGCTAAGGAGGAGGGTCCCTACCAGA 609916
Query 364616 CTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGC 364675
| || ||||| |||||| |||| ||||| | |||||| || | |||||||| | ||
Sbjct 609915 CGTACGAGGGTTCCCCTGTTTCTCAGGGCATTCTCCAGTACGACATGTGGAATGTTAAGC 609856
Query 364676 CATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGC 364734
| || | | ||| ||||||| | || | | | | | ||| |||| ||| |||
Sbjct 609855 CCTCGGATCTCTGGGACTGGGACGCTCTGAAGGAGC-AGATCAAGCAGCACGGTGTCCGC 609797
Query 364735 AACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAAC 364794
||||| || | ||||||||||| || || || | |||||| | || |||||
Sbjct 609796 AACTCTCTGCTCGTCGCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAAT 609737
Query 364795 GAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTT 364854
||||||||||| || | || ||| |||| ||| || || ||| | || || |||
Sbjct 609736 GAGTGCTTCGAGCCCTACACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTT 609677
Query 364855 CCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGC 364914
| || || || | || | ||||| || |||| || |||||| ||
Sbjct 609676 CAAGTCGTCAACCCATGGCTCTTGAAGGACCTCGTCGACATGGGTCTGTGGTCCGATGCT 609617
Query 364915 ATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAA 364974
||||||||| |||||| |||| || |||||| | |||||||| || ||||
Sbjct 609616 ATGAAGAACCGTATCATTGCCGAGAACGGTTCTATCCAGAACATCCCCAACATTCCTACC 609557
Query 364975 GATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATG 365034
|| ||||| | | ||||| || || |||||||| ||| ||| || | | | |||
Sbjct 609556 GAGGTGAAGGCATTGTACAAGACTGTTTGGGAAATCTCCCAGCGTACCGTTGTACAGATG 609497
Query 365035 GCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAG 365094
|| ||||| || ||||| || ||| ||| ||||| ||||| | ||||| |
Sbjct 609496 GCTGCCGACCGTGGTGCCTTCATCGACCAGTCGCAGTCCCTTAACATCCACATGAAGGAC 609437
Query 365095 CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACA 365154
|| || | |||| | || |||||| ||| || ||||| |||||| |||||
Sbjct 609436 CCGACTATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTGAAGACG 609377
Query 365155 GG 365156
||
Sbjct 609376 GG 609375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303344448828536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |