Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 7e-16 seq1 82.4 5e-11 >seq6 Length=1110370 Score = 98.7 bits (108), Expect = 7e-16 Identities = 198/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253 |||||| ||||| |||||||| ||| | || ||||| ||||||| ||||| || Sbjct 171174 GGACGCCTTCTATCGCTACAAGATGGAGAAGATTGTTACCAAGATCGAGGGCAAGGGCAA 171233 Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313 ||| || || ||||| | |||||| || |||||| || | |||| || || | Sbjct 171234 CGGCATCAAGACCGTTGTCGTCAACCTGAGCAGTGTCGCTCAGTCCCTCGCTCGTCCCGG 171293 Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 |||| | || || ||||| | || || || || ||||| | | || | | Sbjct 171294 TGCCTATGTCATCAAGTACTTCGGCTTTGAGCTCGGTGCCCAGACCAACGTCGACCCCGC 171353 Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433 |||| |||| ||| ||||||| || || || | ||||||||||||||| || || Sbjct 171354 CGACGACCGCTGGATCATTAACGGCTCCCACAATGCCGCCAAGCTGCAGGACCACCTCGA 171413 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 ||||| || |||||| || || || | ||| | ||||| |||||||| Sbjct 171414 TGGCTTCATCAACAAGTTCGTTCTCTGCAAAAAGTGCAAGAACCCCGAGACCGA 171467 >seq1 Length=2214490 Score = 82.4 bits (90), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 6/92 (7%) Strand=Plus/Plus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCG-T 25956 |||||||| ||| | |||| |||||||||||||||||||| | || ||||||| | Sbjct 1946061 AGCCCGTTTCCTCAGTTGTGCTTTCGCTAGATAGTAGATAGAGACCGTGGGAATCTCGTT 1946120 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 | || | |||||||||||| ||||||| |||| Sbjct 1946121 TGATGCATTCATGCGCGTCGCTAATTAAATGA 1946152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944962971388