Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq6 98.7 7e-16
seq1 82.4 5e-11
>seq6
Length=1110370
Score = 98.7 bits (108), Expect = 7e-16
Identities = 198/294 (67%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253
|||||| ||||| |||||||| ||| | || ||||| ||||||| ||||| ||
Sbjct 171174 GGACGCCTTCTATCGCTACAAGATGGAGAAGATTGTTACCAAGATCGAGGGCAAGGGCAA 171233
Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313
||| || || ||||| | |||||| || |||||| || | |||| || || |
Sbjct 171234 CGGCATCAAGACCGTTGTCGTCAACCTGAGCAGTGTCGCTCAGTCCCTCGCTCGTCCCGG 171293
Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
|||| | || || ||||| | || || || || ||||| | | || | |
Sbjct 171294 TGCCTATGTCATCAAGTACTTCGGCTTTGAGCTCGGTGCCCAGACCAACGTCGACCCCGC 171353
Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433
|||| |||| ||| ||||||| || || || | ||||||||||||||| || ||
Sbjct 171354 CGACGACCGCTGGATCATTAACGGCTCCCACAATGCCGCCAAGCTGCAGGACCACCTCGA 171413
Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
||||| || |||||| || || || | ||| | ||||| ||||||||
Sbjct 171414 TGGCTTCATCAACAAGTTCGTTCTCTGCAAAAAGTGCAAGAACCCCGAGACCGA 171467
>seq1
Length=2214490
Score = 82.4 bits (90), Expect = 5e-11
Identities = 74/92 (80%), Gaps = 6/92 (7%)
Strand=Plus/Plus
Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCG-T 25956
|||||||| ||| | |||| |||||||||||||||||||| | || ||||||| |
Sbjct 1946061 AGCCCGTTTCCTCAGTTGTGCTTTCGCTAGATAGTAGATAGAGACCGTGGGAATCTCGTT 1946120
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988
| || | |||||||||||| ||||||| ||||
Sbjct 1946121 TGATGCATTCATGCGCGTCGCTAATTAAATGA 1946152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334944962971388
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |