Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq11 134 2e-26
seq6 95.1 2e-14
>seq11
Length=827760
Score = 134 bits (148), Expect = 2e-26
Identities = 438/676 (65%), Gaps = 16/676 (2%)
Strand=Plus/Plus
Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079
|| ||||| || |||| || ||||| | | ||| ||||||| | | |||| |||
Sbjct 610506 AGACCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTC 610565
Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139
|| ||||||||||| ||||||||||| | || || || | || | || || ||
Sbjct 610566 ATGAAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTG 610625
Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199
|| ||||| ||||| | || | | | ||| | ||||| || || | ||
Sbjct 610626 CCATGGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAG 610685
Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259
||||| | | | || || || ||||| || ||||| || | ||| | ||| |||||||||
Sbjct 610686 ATGGCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTA 610745
Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319
| || | | ||| |||| ||||| ||||| || |||||||| || | || ||
Sbjct 610746 AAGACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAG 610805
Query 63320 CCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377
|| | || || || | ||| ||||| || || || ||||| || ||||| |
Sbjct 610806 CCGGTAGCGCGGATGCGGTGGACGTTG--AGACCAATGCCACCAGCCATCTTGGAGATCA 610863
Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437
|||||| || | || || || || ||||| ||| || || |||||| | |
Sbjct 610864 TTGCGCAGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAA 610923
Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497
| || || ||||| || | || || || || || | |||||||| ||||
Sbjct 610924 GGAAGCAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGT 610983
Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATAT 63551
|||| || | || || | || ||||| ||||| || ||| | || |
Sbjct 610984 GAGTGAAGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCAC 611043
Query 63552 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 63611
|||| |||| || || ||||||||||| | ||||||||| ||||| || | ||||
Sbjct 611044 CCCA--GATG----CCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCT 611097
Query 63612 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 63671
|| || | |||| | ||| ||| | ||||| || || || || || || | |||
Sbjct 611098 TGCCGTCAAGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGT 611157
Query 63672 AAAAGTCTCGTTCGTA 63687
||||| || |||||
Sbjct 611158 TGAAGTCGCGGTCGTA 611173
>seq6
Length=1110370
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720
|| ||||| ||| ||| ||||||||||| | | || | |||||||| || || ||
Sbjct 71249 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGA 71190
Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780
|||||||| ||||| ||||| || ||||| || ||||| || || | ||| ||||||
Sbjct 71189 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAA 71130
Query 32781 ATTCCTTCTACTGCCGCAAAGGCAA 32805
|| || || || || || |||||||
Sbjct 71129 ATACCCTCGACAGCAGCGAAGGCAA 71105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633627659620800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |