Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq6 82.4 9e-11
>seq6
Length=1110370
Score = 82.4 bits (90), Expect = 9e-11
Identities = 163/240 (68%), Gaps = 6/240 (3%)
Strand=Plus/Minus
Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141
||||| | ||| || |||||||| || | ||| ||||| || || || | ||| |||
Sbjct 71259 GTACAGGAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGA 71200
Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201
|||||| | ||| || | || || || ||||||||||| || || || || || |||
Sbjct 71199 GAATGTCAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACC 71140
Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261
| || || ||||| || || || || || || || | ||| | || || | |||
Sbjct 71139 ACTGAAGAAAATACCCTCGACAGCAGCGAAGGCAACCAAACGCTGAGCGAA---GGAGGA 71083
Query 93262 ATT---ACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318
|| | ||| ||||| || | ||||| ||||| || || ||| ||||| | |||
Sbjct 71082 CTTCTCATCGCTAATCCACTTGAGGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAACTGT 71023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556856985503520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |