Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq54 114 1e-20
seq10 113 4e-20
seq14 91.5 1e-13
>seq54
Length=312047
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || ||||| || |||| ||||| ||||| | ||
Sbjct 98584 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCGTCC 98643
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || || || ||||||||||| || || ||||| ||
Sbjct 98644 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 98703
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || ||||| || ||| | ||||| ||||||| | ||||| ||||||
Sbjct 98704 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 98763
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || ||||| | || | || |||| |||| || |||
Sbjct 98764 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTGCGTGGTGGT 98811
>seq10
Length=843860
Score = 113 bits (124), Expect = 4e-20
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || ||||||| || || || || | ||||| | ||| | | ||
Sbjct 383501 ACCGGCAAGACCATCACTCTGGAGGTCGAGTCCTCTGATACTATCGACAACGTGAAGTCC 383560
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| |||||||||||||| || ||||| || || |||||||| || || |||||
Sbjct 383561 AAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTTATCTTCGCTGGCAAG 383620
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | ||||| |||||| ||||||| ||||| ||||| || || |||||| | ||
Sbjct 383621 CAGCTTGAGGACGGTCGCACCCTCTCCGACTACAATATTCAGAAGGAGTCCACCCTTCAC 383680
Query 22423 TTAGT 22427
|| ||
Sbjct 383681 TTGGT 383685
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || || || || || |||| || || || ||| | |
Sbjct 383984 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACAATCACGCTGGAGGTCGAATCATCG 384043
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | | || || ||||| ||||||||||| ||||| ||||| ||
Sbjct 384044 GACACGATCGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 384103
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||| | || || ||||| || ||| | || ||| ||||| | || || ||||||
Sbjct 384104 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCTGACTACAAC 384163
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||| || || || || | || | || | || |||| ||||||
Sbjct 384164 ATTCAGAAGGAGTCAACTCTTCACCTTGTCCTTCGTCTGCGTGGAGGT 384211
>seq14
Length=768254
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286
||| || || || | || ||||| || | || ||||| || || || | || || |
Sbjct 490781 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCAGACACGAT 490722
Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346
||| || |||| || || || ||||||||||| || || || || || || || |
Sbjct 490721 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTT 490662
Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| || |||||||| ||| | |||||| ||||||| ||||||| |||||||| || ||
Sbjct 490661 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 490602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419725196741620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |