Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq54 114 1e-20 seq10 113 4e-20 seq14 91.5 1e-13 >seq54 Length=312047 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| || |||| ||||| ||||| | || Sbjct 98584 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCGTCC 98643 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| || || ||||| || Sbjct 98644 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 98703 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || ||| | ||||| ||||||| | ||||| |||||| Sbjct 98704 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 98763 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | || | || |||| |||| || ||| Sbjct 98764 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTGCGTGGTGGT 98811 >seq10 Length=843860 Score = 113 bits (124), Expect = 4e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || ||||||| || || || || | ||||| | ||| | | || Sbjct 383501 ACCGGCAAGACCATCACTCTGGAGGTCGAGTCCTCTGATACTATCGACAACGTGAAGTCC 383560 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| |||||||||||||| || ||||| || || |||||||| || || ||||| Sbjct 383561 AAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTTATCTTCGCTGGCAAG 383620 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| |||||| ||||||| ||||| ||||| || || |||||| | || Sbjct 383621 CAGCTTGAGGACGGTCGCACCCTCTCCGACTACAATATTCAGAAGGAGTCCACCCTTCAC 383680 Query 22423 TTAGT 22427 || || Sbjct 383681 TTGGT 383685 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| || || || ||| | | Sbjct 383984 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACAATCACGCTGGAGGTCGAATCATCG 384043 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| ||||||||||| ||||| ||||| || Sbjct 384044 GACACGATCGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 384103 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || ||||| || ||| | || ||| ||||| | || || |||||| Sbjct 384104 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCTGACTACAAC 384163 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | || | || | || |||| |||||| Sbjct 384164 ATTCAGAAGGAGTCAACTCTTCACCTTGTCCTTCGTCTGCGTGGAGGT 384211 >seq14 Length=768254 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || ||||| || | || ||||| || || || | || || | Sbjct 490781 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCAGACACGAT 490722 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| || || || || || || || | Sbjct 490721 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTT 490662 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || |||||||| ||| | |||||| ||||||| ||||||| |||||||| || || Sbjct 490661 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 490602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725196741620