Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq6 138 2e-27
seq169 118 2e-21
seq36 107 4e-18
seq11 95.1 2e-14
seq115 87.8 4e-12
>seq6
Length=1110370
Score = 138 bits (152), Expect = 2e-27
Identities = 287/425 (68%), Gaps = 8/425 (2%)
Strand=Plus/Minus
Query 251541 TTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTC 251600
||| || || | ||||| ||| ||||| || | |||||| |||| ||||| |||
Sbjct 71538 TTGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATATTCTC 71479
Query 251601 CATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGAT 251660
||| |||||||||||||| | | ||||| |||| | |||||| || || ||||
Sbjct 71478 CATAAAGTCGAAGGGGTTGGAAGACTTGTAAACCTTGTCGTTGCCAAGAGCAACCAAGAG 71419
Query 251661 GCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACG 251720
|||||| || || ||||| | ||||| |||||| | ||||||||||||| ||
Sbjct 71418 GCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGC 71359
Query 251721 ACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGC 251780
||||||| ||||| | ||| |||| || | || || || | | || |
Sbjct 71358 GCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCATCGACAATGATGTC 71299
Query 251781 CT---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAA 251836
|| | ||||| | | | | | ||||| || | ||||||||||| | | |
Sbjct 71298 CTCGATAACCTGCTTGCTGGGGC----GGTTCTTGAGGTGGGAGTACAGGAGGCAGGCGA 71243
Query 251837 ACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCA 251896
| | ||||||||||||||| ||| ||||| ||||||||| | ||| || ||||
Sbjct 71242 AGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGACCGGGCA 71183
Query 251897 TCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCT 251956
| | || || ||| ||||||||||||| | | |||| ||| ||| | | |||||
Sbjct 71182 TGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAAATACCCT 71123
Query 251957 CGACA 251961
|||||
Sbjct 71122 CGACA 71118
>seq169
Length=88269
Score = 118 bits (130), Expect = 2e-21
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219
||| || || | ||||||||| ||||| ||||| || ||||||||||| ||||| |||||
Sbjct 23801 CTCCCGTATCGCTGTCATTGGCCCCAACGGTGCCGGCAAGTCTACCCTCATCAACGTCCT 23742
Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279
||||| ||| | | || ||||| | | |||| ||||| || || ||
Sbjct 23741 CACTGGTGAGCTCGTCCCTACCGAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGC 23682
Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339
||| || |||||||||||| ||||||||| ||||||||||||| ||| || |
Sbjct 23681 CTACATCAAGCAGCACGCTTTCGCCCACATCGATAACCACCTGGACAAGACCCCCTCTGA 23622
Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390
||||| |||||||| | | || | ||| |||||| ||| || |||| ||
Sbjct 23621 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGTGAGACGATGGACCG 23571
Score = 100 bits (110), Expect = 6e-16
Identities = 157/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||| || || |||| ||||| ||||| || |||| ||||| ||||| |||
Sbjct 24616 GGTGAGGACCTTTGCAACTGCACCTTCTCCCTCGCCTACGGTGCCAAGATCCTGCTCAAC 24557
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | |||| ||||||||||| | || || ||||| ||||||||| || |
Sbjct 24556 CAGACTCACCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 24497
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||| || ||||| ||||| |||| ||| | | ||| ||||| | |||
Sbjct 24496 GGCAAGTCCACCCTCATGCGTGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 24438
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| ||||| | ||| || | || ||||||||| | |||||
Sbjct 24437 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTC 24396
Score = 96.9 bits (106), Expect = 7e-15
Identities = 95/120 (79%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762
||||| ||||| |||||||| ||||| |||||| ||||| | ||| | | || ||
Sbjct 23212 CACTCCCGCATGCGCGGTCTGTCTGGTGGCCAGCGTGTCAAGGTCGTCCTTGCTGCCTGC 23153
Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
||| ||||| | ||||||| ||||||| || ||||||||||||||||| || ||||| ||
Sbjct 23152 TCT-TGGCAGCGCCCTCACTTGATCGTCCTTGACGAGCCTACCAACTACCTCGACCGTGA 23094
>seq36
Length=449435
Score = 107 bits (118), Expect = 4e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || |||||||| ||||| |||||||||||| ||||| | | || ||||| || |
Sbjct 295805 GTCGGCTCTCTGTCTGGTGGATGGAAGATGAAGTTGGCCTTGGCCCGTGCCATGCTCAAG 295746
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
| ||||| |||||||||||||| || || || |||||| ||||| ||||| | |||
Sbjct 295745 GGCGCCGACGTCCTACTGCTTGACGAACCTACTAACCACTTGGACGTTGCCAACATTGCC 295686
Query 279816 TGGCTAGTGTCCTACCT 279832
||||| | | |||||||
Sbjct 295685 TGGCTCGAGACCTACCT 295669
>seq11
Length=827760
Score = 95.1 bits (104), Expect = 2e-14
Identities = 447/698 (64%), Gaps = 13/698 (2%)
Strand=Plus/Plus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174
||||| ||| |||| ||||||||||| || ||||| | | | || || | ||
Sbjct 609461 CTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGTACAACGGTACGCTGGGA 609520
Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234
||| ||||| |||||||||| |||||| || || | | ||||| | |||||
Sbjct 609521 GATTTCCCAAACAGTCTTGTACAATGCCTTCACCTCGGTAGGAATGTTGGGGATGTTCTG 609580
Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAG 293293
|||||| || | |||||| || |||||||||| | |||||||| || |||| |
Sbjct 609581 GATAGAACCGTTCTCGGCAATGATACGGTTCTTCATAGCATCGGACCACAGACCCATG-T 609639
Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353
| | ||| || | || | | |||||| || | ||||| ||||| || ||||
Sbjct 609640 CGACGAGGTCCTTCAAGAGCCATGGGTTGACGACTTGAAACTCGCCAGCAAGGACACGAC 609699
Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAG 293413
| ||||||||| || ||| ||| ||| |||| || | ||||||| |
Sbjct 609700 GTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGG 609759
Query 293414 TAGATGCGGTAGGCATAAGAGCAGTCG-TCAGAGAGTTCCTCACACC---CTTCTTGACA 293469
| || || ||||| | || | || ||||||||| | ||||| || |||||
Sbjct 609760 TGCTGGCAGTCGGCATGGGCGC-GACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATC 609818
Query 293470 CGCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGAT 293527
|| | ||| | |||||| |||||| || || || ||||| ||| | | |
Sbjct 609819 TGCTCCTTCAGAGCGTCCCAGTCCCAGAG--ATCCGAGGGCTTAACATTCCACATGTCGT 609876
Query 293528 ACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCAT 293587
|||| | || |||| |||| || ||||| | || | | ||| || | ||| |
Sbjct 609877 ACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGACCCTCCTCCT 609936
Query 293588 CAGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGG 293646
|| | || ||| || || |||||| ||| || |||||| |||| |
Sbjct 609937 TAGCCAACT-GCACCGACATAGTAAGGGCAGCATGGTAGATTGTCTCGAATATCTTCTTG 609995
Query 293647 TTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGC 293706
||||| | ||||| | ||| || || ||||| || ||||| |||||
Sbjct 609996 TTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCA 610055
Query 293707 AGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGA 293766
|||||||| ||||| | ||||| |||||| | ||| ||||||| | ||||| |
Sbjct 610056 AGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGG 610115
Query 293767 ACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804
|||| || | ||||||||| | |||| |||||
Sbjct 610116 ACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTT 610153
>seq115
Length=178870
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 81374 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 81315
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 81314 CCCACGTCGGGCTCAATTC-CCGTC 81291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027829583300868
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |