Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6 138 2e-27 seq169 118 2e-21 seq36 107 4e-18 seq11 95.1 2e-14 seq115 87.8 4e-12 >seq6 Length=1110370 Score = 138 bits (152), Expect = 2e-27 Identities = 287/425 (68%), Gaps = 8/425 (2%) Strand=Plus/Minus Query 251541 TTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTC 251600 ||| || || | ||||| ||| ||||| || | |||||| |||| ||||| ||| Sbjct 71538 TTGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATATTCTC 71479 Query 251601 CATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGAT 251660 ||| |||||||||||||| | | ||||| |||| | |||||| || || |||| Sbjct 71478 CATAAAGTCGAAGGGGTTGGAAGACTTGTAAACCTTGTCGTTGCCAAGAGCAACCAAGAG 71419 Query 251661 GCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACG 251720 |||||| || || ||||| | ||||| |||||| | ||||||||||||| || Sbjct 71418 GCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGC 71359 Query 251721 ACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGC 251780 ||||||| ||||| | ||| |||| || | || || || | | || | Sbjct 71358 GCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCATCGACAATGATGTC 71299 Query 251781 CT---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAA 251836 || | ||||| | | | | | ||||| || | ||||||||||| | | | Sbjct 71298 CTCGATAACCTGCTTGCTGGGGC----GGTTCTTGAGGTGGGAGTACAGGAGGCAGGCGA 71243 Query 251837 ACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCA 251896 | | ||||||||||||||| ||| ||||| ||||||||| | ||| || |||| Sbjct 71242 AGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGACCGGGCA 71183 Query 251897 TCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCT 251956 | | || || ||| ||||||||||||| | | |||| ||| ||| | | ||||| Sbjct 71182 TGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAAATACCCT 71123 Query 251957 CGACA 251961 ||||| Sbjct 71122 CGACA 71118 >seq169 Length=88269 Score = 118 bits (130), Expect = 2e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || || | ||||||||| ||||| ||||| || ||||||||||| ||||| ||||| Sbjct 23801 CTCCCGTATCGCTGTCATTGGCCCCAACGGTGCCGGCAAGTCTACCCTCATCAACGTCCT 23742 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| ||| | | || ||||| | | |||| ||||| || || || Sbjct 23741 CACTGGTGAGCTCGTCCCTACCGAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGC 23682 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| ||||||||| ||||||||||||| ||| || | Sbjct 23681 CTACATCAAGCAGCACGCTTTCGCCCACATCGATAACCACCTGGACAAGACCCCCTCTGA 23622 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||||| |||||||| | | || | ||| |||||| ||| || |||| || Sbjct 23621 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGTGAGACGATGGACCG 23571 Score = 100 bits (110), Expect = 6e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| ||||| ||||| || |||| ||||| ||||| ||| Sbjct 24616 GGTGAGGACCTTTGCAACTGCACCTTCTCCCTCGCCTACGGTGCCAAGATCCTGCTCAAC 24557 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| ||||||||||| | || || ||||| ||||||||| || | Sbjct 24556 CAGACTCACCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 24497 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 24496 GGCAAGTCCACCCTCATGCGTGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 24438 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || | || ||||||||| | ||||| Sbjct 24437 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTC 24396 Score = 96.9 bits (106), Expect = 7e-15 Identities = 95/120 (79%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||| ||||| |||||||| ||||| |||||| ||||| | ||| | | || || Sbjct 23212 CACTCCCGCATGCGCGGTCTGTCTGGTGGCCAGCGTGTCAAGGTCGTCCTTGCTGCCTGC 23153 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 ||| ||||| | ||||||| ||||||| || ||||||||||||||||| || ||||| || Sbjct 23152 TCT-TGGCAGCGCCCTCACTTGATCGTCCTTGACGAGCCTACCAACTACCTCGACCGTGA 23094 >seq36 Length=449435 Score = 107 bits (118), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || |||||||| ||||| |||||||||||| ||||| | | || ||||| || | Sbjct 295805 GTCGGCTCTCTGTCTGGTGGATGGAAGATGAAGTTGGCCTTGGCCCGTGCCATGCTCAAG 295746 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 | ||||| |||||||||||||| || || || |||||| ||||| ||||| | ||| Sbjct 295745 GGCGCCGACGTCCTACTGCTTGACGAACCTACTAACCACTTGGACGTTGCCAACATTGCC 295686 Query 279816 TGGCTAGTGTCCTACCT 279832 ||||| | | ||||||| Sbjct 295685 TGGCTCGAGACCTACCT 295669 >seq11 Length=827760 Score = 95.1 bits (104), Expect = 2e-14 Identities = 447/698 (64%), Gaps = 13/698 (2%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||||| ||| |||| ||||||||||| || ||||| | | | || || | || Sbjct 609461 CTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGTACAACGGTACGCTGGGA 609520 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 ||| ||||| |||||||||| |||||| || || | | ||||| | ||||| Sbjct 609521 GATTTCCCAAACAGTCTTGTACAATGCCTTCACCTCGGTAGGAATGTTGGGGATGTTCTG 609580 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAG 293293 |||||| || | |||||| || |||||||||| | |||||||| || |||| | Sbjct 609581 GATAGAACCGTTCTCGGCAATGATACGGTTCTTCATAGCATCGGACCACAGACCCATG-T 609639 Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353 | | ||| || | || | | |||||| || | ||||| ||||| || |||| Sbjct 609640 CGACGAGGTCCTTCAAGAGCCATGGGTTGACGACTTGAAACTCGCCAGCAAGGACACGAC 609699 Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAG 293413 | ||||||||| || ||| ||| ||| |||| || | ||||||| | Sbjct 609700 GTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGG 609759 Query 293414 TAGATGCGGTAGGCATAAGAGCAGTCG-TCAGAGAGTTCCTCACACC---CTTCTTGACA 293469 | || || ||||| | || | || ||||||||| | ||||| || ||||| Sbjct 609760 TGCTGGCAGTCGGCATGGGCGC-GACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATC 609818 Query 293470 CGCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGAT 293527 || | ||| | |||||| |||||| || || || ||||| ||| | | | Sbjct 609819 TGCTCCTTCAGAGCGTCCCAGTCCCAGAG--ATCCGAGGGCTTAACATTCCACATGTCGT 609876 Query 293528 ACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCAT 293587 |||| | || |||| |||| || ||||| | || | | ||| || | ||| | Sbjct 609877 ACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGACCCTCCTCCT 609936 Query 293588 CAGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGG 293646 || | || ||| || || |||||| ||| || |||||| |||| | Sbjct 609937 TAGCCAACT-GCACCGACATAGTAAGGGCAGCATGGTAGATTGTCTCGAATATCTTCTTG 609995 Query 293647 TTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGC 293706 ||||| | ||||| | ||| || || ||||| || ||||| ||||| Sbjct 609996 TTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCA 610055 Query 293707 AGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGA 293766 |||||||| ||||| | ||||| |||||| | ||| ||||||| | ||||| | Sbjct 610056 AGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGG 610115 Query 293767 ACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 |||| || | ||||||||| | |||| ||||| Sbjct 610116 ACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTT 610153 >seq115 Length=178870 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 81374 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 81315 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 81314 CCCACGTCGGGCTCAATTC-CCGTC 81291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027829583300868