Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq54 172 1e-37 seq10 158 2e-33 seq169 154 3e-32 seq6 134 3e-26 seq101 123 5e-23 seq36 93.3 8e-14 >seq54 Length=312047 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| ||| || |||||||| || |||||||| || ||||| Sbjct 98810 CCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 98751 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || |||||||| || Sbjct 98750 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 98691 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 98690 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 98631 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || |||||||||||||| ||||| |||||||| || Sbjct 98630 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATGAT 98581 >seq10 Length=843860 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || | ||| || || ||||| || || ||||| || || || Sbjct 384210 CCTCCACGCAGACGAAGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAC 384151 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| |||||||| || | | || |||||||| ||| Sbjct 384150 AAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGGA 384091 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||| ||| ||||| ||||| | |||||| || Sbjct 384090 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATCGTGTCCGATGATTCGACC 384031 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| || ||||| || | ||||||||||| |||||||| Sbjct 384030 TCCAGCGTGATTGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 383984 Score = 143 bits (158), Expect = 5e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || ||||| || ||||||||||| || || ||| Sbjct 383982 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAG 383923 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || | | ||| || || || || Sbjct 383922 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGG 383863 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| |||||||| | |||||| |||||||| || | || || || Sbjct 383862 ATGCCTTCCTTGTCCTGAATCTTAGACTTGACATTGTCGATGGTATCAGAGGACTCAACC 383803 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | |||||||| || || || ||||||||||||| Sbjct 383802 TCGAGAGTGATGGTCTTGCCAGTAAGGGTCTTGACGA 383766 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| ||||| ||||| || |||||||| |||||| Sbjct 384438 CCGCCACGCAGACGGAGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCGCTC 384379 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || || ||||| || || || ||||| | || || || || || Sbjct 384378 AGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATCAGGGGGG 384319 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||| | ||| || || || ||||| | || || || Sbjct 384318 ATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCAATCGTGTCCGAAGACTCAACC 384259 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| || | ||||||||||| || ||||| Sbjct 384258 TCCAACGTAATTGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 384212 >seq169 Length=88269 Score = 154 bits (170), Expect = 3e-32 Identities = 672/1042 (64%), Gaps = 52/1042 (5%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| ||||||| ||||||||||||| || || ||| |||||| Sbjct 23607 CGCCACTGGATGTACTCAGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAAGCG 23666 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099 ||||| | ||| || || || ||||| |||| | | | | || || || Sbjct 23667 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTCGGTAGGG 23726 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 | || || || |||||||| |||||||| |||| |||||| ||||| ||||||||||| Sbjct 23727 ACGAGC-TCACCAGTGAGGACGTTGATGAGGGTAGACTTGCCGGCACCGTTGGGGCCAAT 23785 Query 225160 CACGCCAATCCGGGATGACATTGCAAC-CTGC---GAGTTCACGTTG--CTGAAGATCTC 225213 || | || ||||| | | | | | ||| ||| | | | | |||| | | | Sbjct 23786 GACAGCGATACGGGA-GCCGAGGGAGCACTGGAAAGAGATGTCCTGGATCTGAGGCTTGC 23844 Query 225214 AGGGCCAGTTTGGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGGTC 225267 || | | |||| |||| || | ||||||| ||| || | | Sbjct 23845 TGGTACCGG--GGTACTGGAAGGACATCTTGCTGGCACGCAG------GATAGCCTTGGC 23896 Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327 ||||| | | |||||| ||||| |||||||||||||| ||| || | | ||| Sbjct 23897 CTTGGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGTGAACTCCATCTCGGAGTC 23956 Query 225328 CTTCAGGTCGTAGTAAGAT---GCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTT 225384 | || ||||||||||| ||||| || || ||| ||||| | ||||| Sbjct 23957 GCTGAGCTCGTAGTAAGACTTGGCAGCAG-GGTTCTTCTTG--ACGAACTCCTTGAGGTT 24013 Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTG 225443 || ||| | ||||||||| | || |||| || ||||| ||| | ||| || Sbjct 24014 ACCACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGACAATGTGCTG-GCAGACGT 24069 Query 225444 CGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTG 225502 ||| |||||| ||||||||||||| || |||||||||| || | || ||| Sbjct 24070 TGTCGAGGAAGGCAGAGTCGTGGGAGACGATGATGGACGTGCAAG-------GGGAGTTG 24122 Query 225503 ---AGGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTC 225558 |||| || | |||||| ||||| | ||||||| |||||| ||||| ||||| Sbjct 24123 CAAAGGTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTAGGCTCGTC 24181 Query 225559 CAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCA 225618 ||||||||||| || | | || || ||| || || | |||||||| ||||| Sbjct 24182 GAGAAGCAGGATATCGGGGGCCTCGAAGACGGCACGGCACAGGGCGAGCTTCATCTTCCA 24241 Query 225619 GCCCCCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAG 225678 || || || |||| ||| | | | | | ||| |||||| |||| Sbjct 24242 ACCACCAGAAAGGGCAGAGATCTCACCCTTGACCATGTTCTCGGTGAAGCCGAACTCGTT 24301 Query 225679 GAGCGT---CTGGATAATGCGCTCGGGAGAGCT-GCGAGCGGCAACGTTGGGGTCGGACG 225734 ||| | || || | || ||||| || | | |||| | | | | | | Sbjct 24302 CAGCTTGGCCTCGACGTCGGCCT-GGGAGGTCTCGACACCGGCGTCCTGGAGCTTCTTCA 24360 Query 225735 AGAGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACA 225794 | | || |||||| || | | ||| | ||||| |||||| || ||| | | Sbjct 24361 TGGTCCAGTCGATGGTGGTCATCTCAGTGTCAGCAGAGTCAAGGTCGTGCTCGACGAAGA 24420 Query 225795 CCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGA 225854 | ||| || || || | |||||| ||||| | ||| | || || ||||| | Sbjct 24421 CGGTCTTGACCTCGGACTGCTTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACGCA 24480 Query 225855 GCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGA 225914 ||||| |||||| | |||||||||||| || ||||| | | || ||||||| Sbjct 24481 TGAGGGTGGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGA 24540 Query 225915 TGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAAT 225974 |||| | || ||| || ||||||||| |||| ||||| |||||||| ||| | Sbjct 24541 GACGGAGGTGAGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCGAGGGAGAAGGTGCAGT 24600 Query 225975 CGCACAGGTCCTCACCCTCCTC 225996 ||| ||||||||||||||||| Sbjct 24601 TGCAAAGGTCCTCACCCTCCTC 24622 >seq6 Length=1110370 Score = 134 bits (148), Expect = 3e-26 Identities = 322/480 (67%), Gaps = 18/480 (4%) Strand=Plus/Minus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 ||||| ||||| ||||| ||||| || | || || || |||||||||| |||||| Sbjct 71555 TTCATAACGCCGGCCTTTTGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCA 71496 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC----AAACTGCTTGGG 10048 | ||||| || |||||| ||||| |||||||| | | | |||| |||| Sbjct 71495 CCCAGGGAGATATTCTCCATAAAGTCGAAGGGGTTG--GAAGACTTGTAAAC--CTTGTC 71440 Query 10049 GTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTC 10108 || || || || || | |||||| || |||||||| |||||||| ||||||||| Sbjct 71439 GTTGCCAAGAGCAACCAAGAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTT 71380 Query 10109 CGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGC 10168 ||||||||||||| || | ||| || | ||| || | ||| |||| || | Sbjct 71379 GGAGTTCATGCCAAGCAGGGCGCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTT 71320 Query 10169 GACCGCTTCCTCGACGATG--CTCTTTA--CCACGTCAAGGGACAGCTTGTTCTCGAGCT 10224 ||| || || | | |||| ||| || | | | ||| | ||||| ||| | Sbjct 71319 GACGGCATCGACAATGATGTCCTCGATAACCTGCTTGCTGGGGC----GGTTCTTGAGGT 71264 Query 10225 TCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGT 10284 || |||||||| | || | ||| || |||||||| || ||||| ||||| Sbjct 71263 GGGAGTACAGGAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGT 71204 Query 10285 TGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACG 10344 |||| || ||||||||||||||| || || || |||||||| |||| | ||| | Sbjct 71203 TGGAGAATGTCAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGG 71144 Query 10345 ACCCGGAGAACAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAGGAG 10403 || ||| | || |||||| || ||| | |||| || | |||| ||||||||| Sbjct 71143 CACCACTGAAGAAAATACCCTCGACAGCA-GCGAAGGCAACCAAACGCTGAGCGAAGGAG 71085 >seq101 Length=192779 Score = 123 bits (136), Expect = 5e-23 Identities = 219/314 (70%), Gaps = 4/314 (1%) Strand=Plus/Minus Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356 || |||||||| || || |||||||||||| || || || || | || || | | Sbjct 22845 CCAGTGTGGACATCTTCTGAGAAGCCAATCTCGGCCGTTCCACCCACTTCGACGAGAGAC 22786 Query 59357 TCTCGGCGGTAGACTGCGCATGTCCCGACGCACA-CGGCGCCGCCAAAGGTGTCGCGAGA 59415 || || ||||||| ||| | ||||| || | | ||| || | | || ||| Sbjct 22785 TCGCGACGGTAGAGCGCGTTGCTTCCGACACAGATAGACGCTCCCCATCG-GTTGCGGTT 22727 Query 59416 AACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAGT 59475 ||||||| || |||||| ||||| ||||| || || || | |||||||||| || Sbjct 22726 TACCTGGACGACACGGTAAAACAGCTCCTGTGTGGCACCGGCGCCCTGCTCAACCCACGT 22667 Query 59476 CTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCATG 59535 ||||||| | ||| |||| |||||||| |||| |||| || ||||| ||||| | Sbjct 22666 CTGGTCGTCGGTAACACGGAAGTACTGGGGGCTCTGAACAAGGGCCGTCTTGTCGTCA-G 22608 Query 59536 GGAAAAG-TAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATCGA 59594 ||| | | ||| | |||||||| |||| |||||||| || ||||| || |||| Sbjct 22607 CCAAATGCTCCACCATCAGCTCCTTGAGAAAGTCGGGGCGCGGGCAAAAGTCGGCGTCGA 22548 Query 59595 AGATGGCAAAGAAG 59608 | ||||| |||||| Sbjct 22547 AAATGGCGAAGAAG 22534 >seq36 Length=449435 Score = 93.3 bits (102), Expect = 8e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504 ||| ||||| || ||||||||||| || || | | | | | | || |||||| Sbjct 295611 GTCGAGGAAACCGGAGTCGTGGGAAACGATCAAGCTGGTAATCTCGGGGTGGGTCTTGAG 295670 Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 || || |||||| || | |||| ||||||| |||||| ||||||||||| || || Sbjct 295671 GTAGGTCTCGAGCCAGGCAATGTTGGCAACGTCCAAGTGGTTAGTAGGTTCGTCAAGCAG 295730 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 |||| ||| || | |||| ||||| || | | | || |||||| ||||| || || Sbjct 295731 TAGGACGTCGGCGCCCTTGAGCATGGCACGGGCCAAGGCCAACTTCATCTTCCATCCACC 295790 Query 225625 GGACAGGGAGCCGA 225638 ||||| ||||||| Sbjct 295791 AGACAGAGAGCCGA 295804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921616086886560