Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq54 172 1e-37
seq10 158 2e-33
seq169 154 3e-32
seq6 134 3e-26
seq101 123 5e-23
seq36 93.3 8e-14
>seq54
Length=312047
Score = 172 bits (190), Expect = 1e-37
Identities = 176/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| |||| ||| || |||||||| || |||||||| || |||||
Sbjct 98810 CCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 98751
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || || | || |||||||| ||
Sbjct 98750 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 98691
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 98690 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 98631
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
|| | |||||| || || |||||||||||||| ||||| |||||||| ||
Sbjct 98630 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATGAT 98581
>seq10
Length=843860
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || || | || | ||| || || ||||| || || ||||| || || ||
Sbjct 384210 CCTCCACGCAGACGAAGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAC 384151
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | |||||||| | |||||| |||||||| || | | || |||||||| |||
Sbjct 384150 AAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGGA 384091
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | ||| ||| ||||| ||||| | |||||| ||
Sbjct 384090 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATCGTGTCCGATGATTCGACC 384031
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| ||||| || ||||| || | ||||||||||| ||||||||
Sbjct 384030 TCCAGCGTGATTGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 383984
Score = 143 bits (158), Expect = 5e-29
Identities = 162/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || ||||| || ||||||||||| || || |||
Sbjct 383982 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAG 383923
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || || | | ||| || || || ||
Sbjct 383922 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGG 383863
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||||||||| |||||||| | |||||| |||||||| || | || || ||
Sbjct 383862 ATGCCTTCCTTGTCCTGAATCTTAGACTTGACATTGTCGATGGTATCAGAGGACTCAACC 383803
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
|| | |||||||| || || || |||||||||||||
Sbjct 383802 TCGAGAGTGATGGTCTTGCCAGTAAGGGTCTTGACGA 383766
Score = 122 bits (134), Expect = 2e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | || | ||| ||||| ||||| || |||||||| ||||||
Sbjct 384438 CCGCCACGCAGACGGAGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCGCTC 384379
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || || ||||| || || || ||||| | || || || || ||
Sbjct 384378 AGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATCAGGGGGG 384319
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||||||||| ||||| | ||| || || || ||||| | || || ||
Sbjct 384318 ATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCAATCGTGTCCGAAGACTCAACC 384259
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || || ||||| || | ||||||||||| || |||||
Sbjct 384258 TCCAACGTAATTGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 384212
>seq169
Length=88269
Score = 154 bits (170), Expect = 3e-32
Identities = 672/1042 (64%), Gaps = 52/1042 (5%)
Strand=Plus/Plus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| ||||||| ||||||||||||| || || ||| ||||||
Sbjct 23607 CGCCACTGGATGTACTCAGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAAGCG 23666
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099
||||| | ||| || || || ||||| |||| | | | | || || ||
Sbjct 23667 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTCGGTAGGG 23726
Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
| || || || |||||||| |||||||| |||| |||||| ||||| |||||||||||
Sbjct 23727 ACGAGC-TCACCAGTGAGGACGTTGATGAGGGTAGACTTGCCGGCACCGTTGGGGCCAAT 23785
Query 225160 CACGCCAATCCGGGATGACATTGCAAC-CTGC---GAGTTCACGTTG--CTGAAGATCTC 225213
|| | || ||||| | | | | | ||| ||| | | | | |||| | | |
Sbjct 23786 GACAGCGATACGGGA-GCCGAGGGAGCACTGGAAAGAGATGTCCTGGATCTGAGGCTTGC 23844
Query 225214 AGGGCCAGTTTGGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGGTC 225267
|| | | |||| |||| || | ||||||| ||| || | |
Sbjct 23845 TGGTACCGG--GGTACTGGAAGGACATCTTGCTGGCACGCAG------GATAGCCTTGGC 23896
Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327
||||| | | |||||| ||||| |||||||||||||| ||| || | | |||
Sbjct 23897 CTTGGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGTGAACTCCATCTCGGAGTC 23956
Query 225328 CTTCAGGTCGTAGTAAGAT---GCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTT 225384
| || ||||||||||| ||||| || || ||| ||||| | |||||
Sbjct 23957 GCTGAGCTCGTAGTAAGACTTGGCAGCAG-GGTTCTTCTTG--ACGAACTCCTTGAGGTT 24013
Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTG 225443
|| ||| | ||||||||| | || |||| || ||||| ||| | ||| ||
Sbjct 24014 ACCACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGACAATGTGCTG-GCAGACGT 24069
Query 225444 CGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTG 225502
||| |||||| ||||||||||||| || |||||||||| || | || |||
Sbjct 24070 TGTCGAGGAAGGCAGAGTCGTGGGAGACGATGATGGACGTGCAAG-------GGGAGTTG 24122
Query 225503 ---AGGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTC 225558
|||| || | |||||| ||||| | ||||||| |||||| ||||| |||||
Sbjct 24123 CAAAGGTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTAGGCTCGTC 24181
Query 225559 CAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCA 225618
||||||||||| || | | || || ||| || || | |||||||| |||||
Sbjct 24182 GAGAAGCAGGATATCGGGGGCCTCGAAGACGGCACGGCACAGGGCGAGCTTCATCTTCCA 24241
Query 225619 GCCCCCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAG 225678
|| || || |||| ||| | | | | | ||| |||||| ||||
Sbjct 24242 ACCACCAGAAAGGGCAGAGATCTCACCCTTGACCATGTTCTCGGTGAAGCCGAACTCGTT 24301
Query 225679 GAGCGT---CTGGATAATGCGCTCGGGAGAGCT-GCGAGCGGCAACGTTGGGGTCGGACG 225734
||| | || || | || ||||| || | | |||| | | | | | |
Sbjct 24302 CAGCTTGGCCTCGACGTCGGCCT-GGGAGGTCTCGACACCGGCGTCCTGGAGCTTCTTCA 24360
Query 225735 AGAGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACA 225794
| | || |||||| || | | ||| | ||||| |||||| || ||| | |
Sbjct 24361 TGGTCCAGTCGATGGTGGTCATCTCAGTGTCAGCAGAGTCAAGGTCGTGCTCGACGAAGA 24420
Query 225795 CCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGA 225854
| ||| || || || | |||||| ||||| | ||| | || || ||||| |
Sbjct 24421 CGGTCTTGACCTCGGACTGCTTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACGCA 24480
Query 225855 GCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGA 225914
||||| |||||| | |||||||||||| || ||||| | | || |||||||
Sbjct 24481 TGAGGGTGGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGA 24540
Query 225915 TGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAAT 225974
|||| | || ||| || ||||||||| |||| ||||| |||||||| ||| |
Sbjct 24541 GACGGAGGTGAGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCGAGGGAGAAGGTGCAGT 24600
Query 225975 CGCACAGGTCCTCACCCTCCTC 225996
||| |||||||||||||||||
Sbjct 24601 TGCAAAGGTCCTCACCCTCCTC 24622
>seq6
Length=1110370
Score = 134 bits (148), Expect = 3e-26
Identities = 322/480 (67%), Gaps = 18/480 (4%)
Strand=Plus/Minus
Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992
||||| ||||| ||||| ||||| || | || || || |||||||||| ||||||
Sbjct 71555 TTCATAACGCCGGCCTTTTGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCA 71496
Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC----AAACTGCTTGGG 10048
| ||||| || |||||| ||||| |||||||| | | | |||| ||||
Sbjct 71495 CCCAGGGAGATATTCTCCATAAAGTCGAAGGGGTTG--GAAGACTTGTAAAC--CTTGTC 71440
Query 10049 GTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTC 10108
|| || || || || | |||||| || |||||||| |||||||| |||||||||
Sbjct 71439 GTTGCCAAGAGCAACCAAGAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTT 71380
Query 10109 CGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGC 10168
||||||||||||| || | ||| || | ||| || | ||| |||| || |
Sbjct 71379 GGAGTTCATGCCAAGCAGGGCGCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTT 71320
Query 10169 GACCGCTTCCTCGACGATG--CTCTTTA--CCACGTCAAGGGACAGCTTGTTCTCGAGCT 10224
||| || || | | |||| ||| || | | | ||| | ||||| ||| |
Sbjct 71319 GACGGCATCGACAATGATGTCCTCGATAACCTGCTTGCTGGGGC----GGTTCTTGAGGT 71264
Query 10225 TCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGT 10284
|| |||||||| | || | ||| || |||||||| || ||||| |||||
Sbjct 71263 GGGAGTACAGGAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGT 71204
Query 10285 TGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACG 10344
|||| || ||||||||||||||| || || || |||||||| |||| | ||| |
Sbjct 71203 TGGAGAATGTCAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGG 71144
Query 10345 ACCCGGAGAACAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAGGAG 10403
|| ||| | || |||||| || ||| | |||| || | |||| |||||||||
Sbjct 71143 CACCACTGAAGAAAATACCCTCGACAGCA-GCGAAGGCAACCAAACGCTGAGCGAAGGAG 71085
>seq101
Length=192779
Score = 123 bits (136), Expect = 5e-23
Identities = 219/314 (70%), Gaps = 4/314 (1%)
Strand=Plus/Minus
Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356
|| |||||||| || || |||||||||||| || || || || | || || | |
Sbjct 22845 CCAGTGTGGACATCTTCTGAGAAGCCAATCTCGGCCGTTCCACCCACTTCGACGAGAGAC 22786
Query 59357 TCTCGGCGGTAGACTGCGCATGTCCCGACGCACA-CGGCGCCGCCAAAGGTGTCGCGAGA 59415
|| || ||||||| ||| | ||||| || | | ||| || | | || |||
Sbjct 22785 TCGCGACGGTAGAGCGCGTTGCTTCCGACACAGATAGACGCTCCCCATCG-GTTGCGGTT 22727
Query 59416 AACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAGT 59475
||||||| || |||||| ||||| ||||| || || || | |||||||||| ||
Sbjct 22726 TACCTGGACGACACGGTAAAACAGCTCCTGTGTGGCACCGGCGCCCTGCTCAACCCACGT 22667
Query 59476 CTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCATG 59535
||||||| | ||| |||| |||||||| |||| |||| || ||||| ||||| |
Sbjct 22666 CTGGTCGTCGGTAACACGGAAGTACTGGGGGCTCTGAACAAGGGCCGTCTTGTCGTCA-G 22608
Query 59536 GGAAAAG-TAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATCGA 59594
||| | | ||| | |||||||| |||| |||||||| || ||||| || ||||
Sbjct 22607 CCAAATGCTCCACCATCAGCTCCTTGAGAAAGTCGGGGCGCGGGCAAAAGTCGGCGTCGA 22548
Query 59595 AGATGGCAAAGAAG 59608
| ||||| ||||||
Sbjct 22547 AAATGGCGAAGAAG 22534
>seq36
Length=449435
Score = 93.3 bits (102), Expect = 8e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504
||| ||||| || ||||||||||| || || | | | | | | || ||||||
Sbjct 295611 GTCGAGGAAACCGGAGTCGTGGGAAACGATCAAGCTGGTAATCTCGGGGTGGGTCTTGAG 295670
Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564
|| || |||||| || | |||| ||||||| |||||| ||||||||||| || ||
Sbjct 295671 GTAGGTCTCGAGCCAGGCAATGTTGGCAACGTCCAAGTGGTTAGTAGGTTCGTCAAGCAG 295730
Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624
|||| ||| || | |||| ||||| || | | | || |||||| ||||| || ||
Sbjct 295731 TAGGACGTCGGCGCCCTTGAGCATGGCACGGGCCAAGGCCAACTTCATCTTCCATCCACC 295790
Query 225625 GGACAGGGAGCCGA 225638
||||| |||||||
Sbjct 295791 AGACAGAGAGCCGA 295804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921616086886560
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