Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq11 361 1e-94
seq6 244 2e-59
>seq11
Length=827760
Score = 361 bits (400), Expect = 1e-94
Identities = 913/1373 (66%), Gaps = 49/1373 (4%)
Strand=Plus/Plus
Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149
||| || || |||||||| || | || || || || ||||| | |||| | || ||
Sbjct 609665 GTTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGG 609724
Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209
||||| || ||| ||||||||| ||||| | ||||| |||||||||||||||| ||
Sbjct 609725 CTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGAC 609784
Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGAT--GCGGAGTCTGAGCTCGTTCCAGTCC 244267
|||||| ||| | || |||||| || ||| || || |||| || |||||||
Sbjct 609785 GAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGC--GTCCCAGTCC 609842
Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327
|| | ||||| | | | | || ||||||||| |||| || | ||||
Sbjct 609843 CAGAGATCCGAGGGCT--TAACATT-------CCACATGTCGTACTGGAGAATGCCCTGA 609893
Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCT 244386
|| ||| |||||||| ||| |||||||||| || || |||| || || |
Sbjct 609894 GAAACAGGGGAACCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACTGCACCGAC 609953
Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446
| || ||||| || | |||||| |||||||| ||| ||||||| | ||| || || |
Sbjct 609954 ATAGTA-AGGGCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTT- 610011
Query 244447 GCCGCAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504
| | || |||||| |||| | || |||| | || || || |||||||| |||
Sbjct 610012 -CAGGAGACTCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACACCG 610070
Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTG 244564
| || ||||| | ||| ||| ||||| | ||| || | || ||||| ||||
Sbjct 610071 AGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACCGGGTAGTGGTTG 610130
Query 244565 CCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGA 244624
| || || | ||||||||||||| || | || ||| ||| ||| |||
Sbjct 610131 ACATCAATGATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGG 610190
Query 244625 AAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684
|||||||| | | ||||| | | || | || || | | ||| |
Sbjct 610191 AAGTCGTAGAC------ACCCTCGTTG-TAGTCA-----ACGAATGTGGGCAAGGCAAGC 610238
Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744
||||||||| || || || ||||| || | || ||||| | ||||| ||||||
Sbjct 610239 GAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAG 610298
Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804
||||| || |||||| ||||||| || || ||| ||| |||| || |||
Sbjct 610299 AGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCC 610358
Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864
||||||||||||||||| || |||||| || || |||||| | | ||||||
Sbjct 610359 TTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGC 610418
Query 244865 TCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCC-TCTGCCTCGTAGCGGGTGTACAGGGC 244923
| ||||| | ||| ||||| |||||||| |||| ||||| ||| | |||
Sbjct 610419 TTTTGGGCCTTAAGAGTCTTGCGACCCTTGCCCATCTGT-TCGTACTTCTCGTATAAGGC 610477
Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983
||||||||| || || ||| | || || |||||| |||||||| ||| |
Sbjct 610478 CTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAGAGT 610537
Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043
||| || ||| | | || |||| ||||||||| || |||||||| || || ||||
Sbjct 610538 CCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAAGGAA 610597
Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103
||||| | || | ||| ||| |||| |||||||| ||| || |||||||| ||
Sbjct 610598 AAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAGTCGAA 610657
Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163
||| ||| ||||||| ||||| | |||| || | || ||||| ||||||||||| ||
Sbjct 610658 GACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGCCACC 610717
Query 245164 CTGGTCCACCATCCTCTCGAGC-GCG---TTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219
|||||| | | | ||||| | | || |||| || || | || || || ||||
Sbjct 610718 CTGGTCGA----CGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGT 610773
Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC- 245278
| ||| ||| |||||||| ||||| | ||| | | | || ||| | |||||
Sbjct 610774 TGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGC---GCGGATGC-GGTGGACG 610829
Query 245279 ---ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCT 245335
| || | || || || ||||||||| | |||||| |||||| ||||||
Sbjct 610830 TTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAA 610889
Query 245336 ATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG 245395
|| ||||| || |||| ||||||| || || ||||| || |||||||| | | |
Sbjct 610890 ATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGG 610949
Query 245396 GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448
||| | | | |||||| || || || |||||| || ||| | ||||||
Sbjct 610950 GGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGA 611002
>seq6
Length=1110370
Score = 244 bits (270), Expect = 2e-59
Identities = 363/508 (71%), Gaps = 19/508 (4%)
Strand=Plus/Plus
Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAG 42703
|||||||| |||||||| ||||| ||||| || | || | | | |||| || |
Sbjct 71041 AAGAAGGCCGACTGGGCCCTCAAGTGGATT-AGCGATGAGAAGTCCTCCTTCGCTCAGCG 71099
Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763
|||| ||||| | || |||||||| || |||||| || |||||||||||||||||
Sbjct 71100 TTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCATCTT 71159
Query 42764 CTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822
|||||||||| || || || |||||||| || || ||||| ||||| ||||||
Sbjct 71160 CTGGCTCAAGAAGCGCGGCCTC-ATGCCCGGTCTGACATTCTCCAACGAGCTCATCTCTC 71218
Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882
| |||||||| ||||| | ||||| ||||||||||||| ||| |||||||| | ||
Sbjct 71219 GTGACGAGGGTCTGCACACCGACTTCGCCTGCCTCCTGTACTC---CCACCTCAAGAACC 71275
Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942
||| ||| || || || |||||| || ||||| |||| ||| ||||||
Sbjct 71276 GCCCCAGCAAGCAGGTTATCGAGGACATCATTGTCGATGCCGTCAAGATTGAGCAGGAGT 71335
Query 42943 TCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGT 43002
|||| ||| || | || || ||||| | ||||||||| | |||| ||| |||
Sbjct 71336 TCCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGT 71395
Query 43003 ACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CGCC----TCT 43056
|||| ||| ||||||||||| ||| | | | | ||| || || | | |
Sbjct 71396 ACATTGAGTTCGTCGCCGACCGCCTCTT------GGTTGCTCTTGGCAACGACAAGGTTT 71449
Query 43057 ACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACT 43116
|||| | | ||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 71450 ACAAGTCTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACT 71509
Query 43117 TTTTCGAGAAGCGCGTCGCCGACTACCA 43144
| || || ||||| || |||||||||||
Sbjct 71510 TCTTTGAAAAGCGTGTTGCCGACTACCA 71537
Score = 143 bits (158), Expect = 5e-29
Identities = 237/336 (71%), Gaps = 11/336 (3%)
Strand=Plus/Plus
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| |||||||||||||| || || ||||||||| ||||||||||| |||
Sbjct 70634 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATCTG 70693
Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTC--TGAGAACGAAAAGTTTTTCCTCAAA 42416
| |||||| | || |||| | || || |||| | || |||| ||| ||
Sbjct 70694 TCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAGGATGAGAAGTACTTCATCTCG 70753
Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476
|||| || |||||||||||||| || |||||||| |||||||||||| ||| | |
Sbjct 70754 CACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 70813
Query 42477 TTCATGAAAGAGGTGC-AGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535
|||| ||||| | ||| | |||||| ||||||||||||||||||||||| ||
Sbjct 70814 TTCAGCGGCGAGGTTCAAGTGC-CTGAGGCCCGCTGCTTCTACGGCTTCCAGATTATGAT 70872
Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592
|||||| | ||||| ||| ||| | ||||||| |||| |||||| ||| ||
Sbjct 70873 GGAGAACATCCACTCCGAGACTTACTC---GCTGCTCATTGACACCTACATCAAGGAGCC 70929
Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628
| | | || | || ||||| ||||| || ||
Sbjct 70930 GGCCCAACGCACGTACCTCTTCAACGCCATTGACAC 70965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944332731276480
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