Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq11 361 1e-94 seq6 244 2e-59 >seq11 Length=827760 Score = 361 bits (400), Expect = 1e-94 Identities = 913/1373 (66%), Gaps = 49/1373 (4%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || || |||||||| || | || || || || ||||| | |||| | || || Sbjct 609665 GTTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGG 609724 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| ||||||||| ||||| | ||||| |||||||||||||||| || Sbjct 609725 CTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGAC 609784 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGAT--GCGGAGTCTGAGCTCGTTCCAGTCC 244267 |||||| ||| | || |||||| || ||| || || |||| || ||||||| Sbjct 609785 GAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGC--GTCCCAGTCC 609842 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 || | ||||| | | | | || ||||||||| |||| || | |||| Sbjct 609843 CAGAGATCCGAGGGCT--TAACATT-------CCACATGTCGTACTGGAGAATGCCCTGA 609893 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCT 244386 || ||| |||||||| ||| |||||||||| || || |||| || || | Sbjct 609894 GAAACAGGGGAACCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACTGCACCGAC 609953 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 | || ||||| || | |||||| |||||||| ||| ||||||| | ||| || || | Sbjct 609954 ATAGTA-AGGGCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTT- 610011 Query 244447 GCCGCAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504 | | || |||||| |||| | || |||| | || || || |||||||| ||| Sbjct 610012 -CAGGAGACTCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACACCG 610070 Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTG 244564 | || ||||| | ||| ||| ||||| | ||| || | || ||||| |||| Sbjct 610071 AGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACCGGGTAGTGGTTG 610130 Query 244565 CCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGA 244624 | || || | ||||||||||||| || | || ||| ||| ||| ||| Sbjct 610131 ACATCAATGATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGG 610190 Query 244625 AAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684 |||||||| | | ||||| | | || | || || | | ||| | Sbjct 610191 AAGTCGTAGAC------ACCCTCGTTG-TAGTCA-----ACGAATGTGGGCAAGGCAAGC 610238 Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744 ||||||||| || || || ||||| || | || ||||| | ||||| |||||| Sbjct 610239 GAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAG 610298 Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804 ||||| || |||||| ||||||| || || ||| ||| |||| || ||| Sbjct 610299 AGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCC 610358 Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 ||||||||||||||||| || |||||| || || |||||| | | |||||| Sbjct 610359 TTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGC 610418 Query 244865 TCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCC-TCTGCCTCGTAGCGGGTGTACAGGGC 244923 | ||||| | ||| ||||| |||||||| |||| ||||| ||| | ||| Sbjct 610419 TTTTGGGCCTTAAGAGTCTTGCGACCCTTGCCCATCTGT-TCGTACTTCTCGTATAAGGC 610477 Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983 ||||||||| || || ||| | || || |||||| |||||||| ||| | Sbjct 610478 CTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAGAGT 610537 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||| || ||| | | || |||| ||||||||| || |||||||| || || |||| Sbjct 610538 CCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAAGGAA 610597 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 ||||| | || | ||| ||| |||| |||||||| ||| || |||||||| || Sbjct 610598 AAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAGTCGAA 610657 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 ||| ||| ||||||| ||||| | |||| || | || ||||| ||||||||||| || Sbjct 610658 GACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGCCACC 610717 Query 245164 CTGGTCCACCATCCTCTCGAGC-GCG---TTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 |||||| | | | ||||| | | || |||| || || | || || || |||| Sbjct 610718 CTGGTCGA----CGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGT 610773 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC- 245278 | ||| ||| |||||||| ||||| | ||| | | | || ||| | ||||| Sbjct 610774 TGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGC---GCGGATGC-GGTGGACG 610829 Query 245279 ---ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCT 245335 | || | || || || ||||||||| | |||||| |||||| |||||| Sbjct 610830 TTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAA 610889 Query 245336 ATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG 245395 || ||||| || |||| ||||||| || || ||||| || |||||||| | | | Sbjct 610890 ATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGG 610949 Query 245396 GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448 ||| | | | |||||| || || || |||||| || ||| | |||||| Sbjct 610950 GGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGA 611002 >seq6 Length=1110370 Score = 244 bits (270), Expect = 2e-59 Identities = 363/508 (71%), Gaps = 19/508 (4%) Strand=Plus/Plus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAG 42703 |||||||| |||||||| ||||| ||||| || | || | | | |||| || | Sbjct 71041 AAGAAGGCCGACTGGGCCCTCAAGTGGATT-AGCGATGAGAAGTCCTCCTTCGCTCAGCG 71099 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 |||| ||||| | || |||||||| || |||||| || ||||||||||||||||| Sbjct 71100 TTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCATCTT 71159 Query 42764 CTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 |||||||||| || || || |||||||| || || ||||| ||||| |||||| Sbjct 71160 CTGGCTCAAGAAGCGCGGCCTC-ATGCCCGGTCTGACATTCTCCAACGAGCTCATCTCTC 71218 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 | |||||||| ||||| | ||||| ||||||||||||| ||| |||||||| | || Sbjct 71219 GTGACGAGGGTCTGCACACCGACTTCGCCTGCCTCCTGTACTC---CCACCTCAAGAACC 71275 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 ||| ||| || || || |||||| || ||||| |||| ||| |||||| Sbjct 71276 GCCCCAGCAAGCAGGTTATCGAGGACATCATTGTCGATGCCGTCAAGATTGAGCAGGAGT 71335 Query 42943 TCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGT 43002 |||| ||| || | || || ||||| | ||||||||| | |||| ||| ||| Sbjct 71336 TCCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGT 71395 Query 43003 ACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CGCC----TCT 43056 |||| ||| ||||||||||| ||| | | | | ||| || || | | | Sbjct 71396 ACATTGAGTTCGTCGCCGACCGCCTCTT------GGTTGCTCTTGGCAACGACAAGGTTT 71449 Query 43057 ACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACT 43116 |||| | | ||||||||||||||||||||| ||||| ||| ||||||||||||| Sbjct 71450 ACAAGTCTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACT 71509 Query 43117 TTTTCGAGAAGCGCGTCGCCGACTACCA 43144 | || || ||||| || ||||||||||| Sbjct 71510 TCTTTGAAAAGCGTGTTGCCGACTACCA 71537 Score = 143 bits (158), Expect = 5e-29 Identities = 237/336 (71%), Gaps = 11/336 (3%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || || ||||||||| ||||||||||| ||| Sbjct 70634 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATCTG 70693 Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTC--TGAGAACGAAAAGTTTTTCCTCAAA 42416 | |||||| | || |||| | || || |||| | || |||| ||| || Sbjct 70694 TCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAGGATGAGAAGTACTTCATCTCG 70753 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 |||| || |||||||||||||| || |||||||| |||||||||||| ||| | | Sbjct 70754 CACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 70813 Query 42477 TTCATGAAAGAGGTGC-AGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| | ||| | |||||| ||||||||||||||||||||||| || Sbjct 70814 TTCAGCGGCGAGGTTCAAGTGC-CTGAGGCCCGCTGCTTCTACGGCTTCCAGATTATGAT 70872 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| | ||||||| |||| |||||| ||| || Sbjct 70873 GGAGAACATCCACTCCGAGACTTACTC---GCTGCTCATTGACACCTACATCAAGGAGCC 70929 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628 | | | || | || ||||| ||||| || || Sbjct 70930 GGCCCAACGCACGTACCTCTTCAACGCCATTGACAC 70965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944332731276480