Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq6 100 6e-16
seq31 86.0 1e-11
>seq6
Length=1110370
Score = 100 bits (110), Expect = 6e-16
Identities = 118/160 (74%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 243566 TTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCA 243625
||||||||||||| | || ||| |||||||| || ||||| ||||||||| | ||
Sbjct 71366 TTGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTCTTGG 71425
Query 243626 TCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCA 243685
| || ||||| | || || || ||||| || |||||||| | |||||||||| |
Sbjct 71426 TTGCTCTTGGCAACGACAAGGTTTACAAGTCTTCCAACCCCTTCGACTTTATGGAGAATA 71485
Query 243686 TTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725
| || || || || || |||||||| |||||||||||
Sbjct 71486 TCTCCCTGGGTGGCAAGACCAACTTCTTTGAAAAGCGTGT 71525
>seq31
Length=482729
Score = 86.0 bits (94), Expect = 1e-11
Identities = 199/290 (69%), Gaps = 10/290 (3%)
Strand=Plus/Minus
Query 298084 TACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTT-CTAGAAGATTAGGGAAAC 298142
|||||| || |||||||||| | ||||| | || |||| | | || | || |
Sbjct 89180 TACGATGGGAGTGATGAACTCCCGGAAGAAGTCGGGGATTTGCAACAAAGATGGGTACTG 89121
Query 298143 AGCTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 298202
| || || || ||||| |||| ||||| || |||| ||||| |||| ||||
Sbjct 89120 AACT-TGCAAGAAGTTTATGAGAAGACCCTTGATATGAGAACCGTCGTGATCCTGATCGG 89062
Query 298203 TCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTT--TACCGGT 298260
||||||||||| ||||||||| || || || || |||| || | | | |
Sbjct 89061 CCATGATCATCAGATGACCGTAGCGTAGACTCTTTGTATCCGTGTAGACCTGCTTGTGCT 89002
Query 298261 TTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG-CC 298318
|| |||||||| | || |||| | ||| |||||| | |||||||||||| || | |
Sbjct 89001 TT--AGGCCGAGGAACTGCTTGATGTTCTG-GATTTCCTGGTTCTTCGTGAT-CTGGTCG 88946
Query 298319 ACGGATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCC 298368
| ||||| || ||||| || || | || |||||||| ||||| |||||
Sbjct 88945 ATCGATGCGTCACGGACGTTTAACATCTTACCACGAAGGGGGAAGACTCC 88896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102872256403800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |