Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6 100 6e-16 seq31 86.0 1e-11 >seq6 Length=1110370 Score = 100 bits (110), Expect = 6e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 243566 TTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCA 243625 ||||||||||||| | || ||| |||||||| || ||||| ||||||||| | || Sbjct 71366 TTGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTCTTGG 71425 Query 243626 TCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCA 243685 | || ||||| | || || || ||||| || |||||||| | |||||||||| | Sbjct 71426 TTGCTCTTGGCAACGACAAGGTTTACAAGTCTTCCAACCCCTTCGACTTTATGGAGAATA 71485 Query 243686 TTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | || || || || || |||||||| ||||||||||| Sbjct 71486 TCTCCCTGGGTGGCAAGACCAACTTCTTTGAAAAGCGTGT 71525 >seq31 Length=482729 Score = 86.0 bits (94), Expect = 1e-11 Identities = 199/290 (69%), Gaps = 10/290 (3%) Strand=Plus/Minus Query 298084 TACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTT-CTAGAAGATTAGGGAAAC 298142 |||||| || |||||||||| | ||||| | || |||| | | || | || | Sbjct 89180 TACGATGGGAGTGATGAACTCCCGGAAGAAGTCGGGGATTTGCAACAAAGATGGGTACTG 89121 Query 298143 AGCTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 298202 | || || || ||||| |||| ||||| || |||| ||||| |||| |||| Sbjct 89120 AACT-TGCAAGAAGTTTATGAGAAGACCCTTGATATGAGAACCGTCGTGATCCTGATCGG 89062 Query 298203 TCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTT--TACCGGT 298260 ||||||||||| ||||||||| || || || || |||| || | | | | Sbjct 89061 CCATGATCATCAGATGACCGTAGCGTAGACTCTTTGTATCCGTGTAGACCTGCTTGTGCT 89002 Query 298261 TTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG-CC 298318 || |||||||| | || |||| | ||| |||||| | |||||||||||| || | | Sbjct 89001 TT--AGGCCGAGGAACTGCTTGATGTTCTG-GATTTCCTGGTTCTTCGTGAT-CTGGTCG 88946 Query 298319 ACGGATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCC 298368 | ||||| || ||||| || || | || |||||||| ||||| ||||| Sbjct 88945 ATCGATGCGTCACGGACGTTTAACATCTTACCACGAAGGGGGAAGACTCC 88896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102872256403800