Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq11 232 8e-56 seq6 111 2e-19 >seq11 Length=827760 Score = 232 bits (256), Expect = 8e-56 Identities = 1162/1832 (63%), Gaps = 43/1832 (2%) Strand=Plus/Plus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 ||||||||||||| || |||| || || ||||||||||| |||||||| || | Sbjct 609328 TGAACTGAATGGGCGCAGCAGCAGCCTGTGTGCGCAGGTAGTACATGCCCGTCTTCAGAC 609387 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684 | |||||||| || | ||||| || | |||| | || || | |||| Sbjct 609388 CGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATAGTCGGGTCCTTCATGT 609447 Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744 || ||| | || || || ||||||||| ||||| || || ||||| | | Sbjct 609448 GGATGTTAAGGGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGTA--- 609504 Query 113745 CATCCTTCATCTTG---ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGA 113801 || | | || | |||||||| ||||| |||| | ||| | || || | Sbjct 609505 CAACGGTACGCTGGGAGATTTCCCAAACAGTCTTGTACAATGCCTTCACCTCGGTAGGAA 609564 Query 113802 TATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGA---TCCTTCATATCCT 113858 | | ||| || ||||| || ||| || | | |||| | | ||||||| | | Sbjct 609565 TGTTGGGGATGTTCTGGATAGA---ACCGTTCTCGGCAATGATACGGTTCTTCATAGCAT 609621 Query 113859 TTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAA 113916 ||||| ||||| || | ||| |||| || ||| ||| | |||| || ||| Sbjct 609622 CGGACCACAGACCCATGTCGACGAGGTCCTTCAAGAGCCATGGGT--TGACGACTTGAAA 609679 Query 113917 CTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATT 113976 ||| || || ||| || | | || || |||| ||||| ||||| ||||||||||| Sbjct 609680 CTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATT 609739 Query 113977 GTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 114036 ||| |||||||| || | |||| ||| || |||||||| || | ||| || ||| || Sbjct 609740 GTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCG 609799 Query 114037 GAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTC 114096 || ||| | | | | || | ||||| || ||||||||||| || | | || Sbjct 609800 GACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAGAGATCCGAGGGCTT 609859 Query 114097 CCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTC 114156 | | |||||| || ||||||| || || || || | || || ||||| | |||| Sbjct 609860 AACATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTG 609919 Query 114157 GTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG--AGGGCTGCGTGATACATT 114214 ||| || ||||| ||| ||||| | | | | | | ||||| || || || ||| Sbjct 609920 GTAGGGACCCTCCTCCTTAGCCAA--CTGCACCGACATAGTAAGGGCAGCATGGTAGATT 609977 Query 114215 GTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCAC 114274 ||||| || || || | | || || || || || | | ||| Sbjct 609978 GTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGA 610037 Query 114275 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 114334 | || ||||||| ||||| || |||||||| ||||| ||||| || | ||| || Sbjct 610038 GCCAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATGTTG 610097 Query 114335 GACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 114394 || || || || || || || || ||| || | || || || || Sbjct 610098 CTGTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTTGCGA 610157 Query 114395 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG 114454 |||||||| |||| || || ||||| | | | || | | | ||| | | | Sbjct 610158 ACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA---GACACCCTCGTTGTAG 610214 Query 114455 ---ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 114511 || | | || | ||| | || ||||| |||||||||| | ||| || | Sbjct 610215 TCAACGAATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCG 610274 Query 114512 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 114571 | |||||| || || || || || | || || || ||||| |||| |||||| || Sbjct 610275 GAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTG- 610333 Query 114572 TTTGACTTTG-TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 114630 ||| |||| ||| ||||||||||| |||||| | || | || ||||| ||||| Sbjct 610334 GTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTG 610393 Query 114631 GGACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACAG--TGGCGTTGGCTCGCCCC 114688 | || ||| || || | ||||| | ||| | || | ||| || |||| Sbjct 610394 AGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTAAGAGTCTTGCG-ACCCTTGCCCA 610452 Query 114689 TCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCT 114748 | || |||||||| ||| | ||| || ||||| ||||| | || | || || Sbjct 610453 T-CTGTTCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGACCA 610511 Query 114749 GGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAG 114808 || || || ||||| | |||| ||| | || || || || | |||||||||| Sbjct 610512 GGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAG 610571 Query 114809 AGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 114868 || || |||||||| ||||| ||| || || || ||| | ||||| | || || Sbjct 610572 AGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGG 610631 Query 114869 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 114928 || |||| || |||||||| | || ||| |||||||| || || || || | || Sbjct 610632 TTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCA 610691 Query 114929 ATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACG 114985 | | || ||| ||| |||||| || |||| || ||| |||||| || Sbjct 610692 AAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACA 610751 Query 114986 CGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG 115045 || ||||| |||| |||||| | || |||||| || || ||| ||| | Sbjct 610752 CGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTA 610811 Query 115046 GCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC 115105 || | || |||| || | |||||| || || ||| ||| ||||| ||||| Sbjct 610812 GCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAG 610871 Query 115106 TCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAG 115165 | |||| || |||| || || ||||| ||||| | || | ||| ||||||||| Sbjct 610872 GTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAA 610931 Query 115166 CTCGACATTTGTGGCCTT--GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGA 115223 |||| |||| ||| || ||||||||||||||||| || || | ||||| ||| Sbjct 610932 GAAGACAGCTGTG--CTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGA 610989 Query 115224 ACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTG 115281 | | |||| |||||| | ||||||||| | |||| || || || || Sbjct 610990 --AGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCA 611047 Query 115282 AATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAG 115341 || || | | ||| ||||| | ||||| |||||| | || | | || || || Sbjct 611048 GATGCCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAG 611107 Query 115342 CCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 115373 | || ||||||| ||||||||||||||| Sbjct 611108 CTTCAGGAGGTACGATCTCTCCAAGGTCTTGA 611139 >seq6 Length=1110370 Score = 111 bits (122), Expect = 2e-19 Identities = 303/460 (66%), Gaps = 18/460 (4%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| |||| ||||| || |||||||| ||||| || ||| | |||||||||||| Sbjct 71535 GTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATATTCTCCAT 71476 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCC-CAATCTGTTTGAG 125871 ||| || || ||||| || || ||| | |||| || ||| | | Sbjct 71475 AAAGTCGAAGGGGTTGGAAGACTTGTAAACCTTGTCGTTGCCAAGAGCAACC------AA 71422 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 ||| || || | |||| |||||||||||| |||| | |||||||| || | || Sbjct 71421 GAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAG 71362 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | || || || || ||| | |||| ||| |||||| | ||||| || | ||| Sbjct 71361 GGCGCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCATCGACAATGAT 71302 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGC 126048 | | | || | | | || | | ||| | | | | ||| || ||| Sbjct 71301 GTCCTCGATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGGGAGTACAGGAGG--CA-GGC 71245 Query 126049 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGG 126108 || || ||| |||||||||||||| |||||||| || || ||||| ||| || || Sbjct 71244 GAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGACCGGG 71185 Query 126109 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCC 126168 |||||| || |||||||| | |||||| || | || | ||| |||||| || || Sbjct 71184 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAAATACC 71125 Query 126169 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 126208 ||| ||| ||||| |||| | ||||| ||| |||||| Sbjct 71124 CTCGACAGCAGCGAAGGCAACCAAACGCTGAGCGAAGGAG 71085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597349508127840