Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq10 105 7e-18
seq54 82.4 8e-11
>seq10
Length=843860
Score = 105 bits (116), Expect = 7e-18
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| | |||| || || || || ||||| ||||| || | || |||||| ||||
Sbjct 383688 AGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACCGTCC 383629
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|||||||||||||| || | || || ||||||||||||||||| || || || || ||
Sbjct 383628 TCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 383569
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| || || | |||||| || || || || | ||| | ||||
Sbjct 383568 TGAATCTTGGACTTCACGTTGTCGATAGTATCAGAGGACTCGACCTCCAGAGTGATGGTC 383509
Query 64412 TTGCCGGT 64419
||||||||
Sbjct 383508 TTGCCGGT 383501
Score = 98.7 bits (108), Expect = 1e-15
Identities = 143/202 (71%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| | |||| || ||||| ||||| |||||||| || | || ||||| | ||
Sbjct 383967 AGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCC 383908
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|||||||||||||| ||| | || | || ||||| || ||||| || ||||| || ||
Sbjct 383907 TCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGGATGCCTTCCTTGTCC 383848
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | |||||| || || || || | ||| | ||||
Sbjct 383847 TGAATCTTAGACTTGACATTGTCGATGGTATCAGAGGACTCAACCTCGAGAGTGATGGTC 383788
Query 64412 TTGCCGGTCAAAGTTTTTACGA 64433
||||| || | || || ||||
Sbjct 383787 TTGCCAGTAAGGGTCTTGACGA 383766
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | ||| || || |||| || || || || ||||||||||| || |
Sbjct 384211 ACCTCCACGCAGACGAAGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGA 384152
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| | ||||| |||||||| ||||| |||| | |||||||||||||||||
Sbjct 384151 CAAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGG 384092
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || || || || || ||| || || | || || | || ||
Sbjct 384091 AATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATCGTGTCCGATGATTCGAC 384032
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||||| || ||||| || || ||||| || |||||
Sbjct 384031 CTCCAGCGTGATTGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 383984
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| |||| | || || || |||| ||| || || || || |||||||||||
Sbjct 384439 ACCGCCACGCAGACGGAGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCGCT 384380
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| |||||| |||| || | ||||| || ||| ||||||| |||||||| || || ||
Sbjct 384379 CAGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATCAGGGGG 384320
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || || || ||||| || || ||| ||| || | || || | || ||
Sbjct 384319 GATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCAATCGTGTCCGAAGACTCAAC 384260
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||||| || ||||| || || ||||| ||||||||
Sbjct 384259 CTCCAACGTAATTGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 384212
>seq54
Length=312047
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | ||||| || || | || || || || || |||||||| || |
Sbjct 98811 ACCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 98752
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| |||||| |||| || |||||||| ||||| | || || |||||||||||||| ||
Sbjct 98751 CAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 98692
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || || || || || || || ||| ||| || | || || | |||||
Sbjct 98691 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCAC 98632
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||||| || || | || || ||||| || |||||
Sbjct 98631 CTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 98584
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499641377433120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |