Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq11 122 8e-23
seq54 114 1e-20
seq10 107 2e-18
seq14 86.0 6e-12
>seq11
Length=827760
Score = 122 bits (134), Expect = 8e-23
Identities = 356/538 (66%), Gaps = 13/538 (2%)
Strand=Plus/Plus
Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093
|| ||| |||||| |||| | ||| | ||||||| || ||||||||||| || || ||
Sbjct 609635 CATGTCGACGAGGTCCTTCAAGAGCCATGGGTTGACGACTTGAAACTCGCCAGCAAGGAC 609694
Query 146094 GCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTG 146153
|| | | || | |||| |||| | |||||||| |||| ||||| || | |||||
Sbjct 609695 ACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTG 609754
Query 146154 CGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTT 146212
| || | || || |||||| ||| || |||| |||||| | || ||||| | ||
Sbjct 609755 AGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTT 609814
Query 146213 GAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGT 146272
| |||| ||| || | ||| | ||| | |||||| ||| | | ||| |
Sbjct 609815 G-ATCTGCTCCTTCAGAGCGTCCCAGTCCCAGA---GATCCGAGGGCTTAACATTCCACA 609870
Query 146273 TGTCGTAATGCATAGTGCC--GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACC 146330
||||||| || | | |||| | | |||||||| | |||||||| | || |||||
Sbjct 609871 TGTCGTACTGGAGAATGCCCTGAGAAACAGGGG--AACCCTCGTACGTCTGGTAGGGACC 609928
Query 146331 GTCGATCTTGGCCAGTTCGCAGCTAGCT-TCCAGAGCCGAAAAGTATATGGTCTCCGCGA 146389
|| ||| |||| | ||| | | | || || | | ||| || ||||| |
Sbjct 609929 CTCCTCCTTAGCCAACT-GCACCGACATAGTAAGGGCAGCATGGTAGATTGTCTCGAATA 609987
Query 146390 TCATGTAGTTGACGCTCCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGG 146449
|| | | ||||| | | || || ||| |||| || |||| || ||||
Sbjct 609988 TCTTCTTGTTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGAGCCAAGAAGG 610047
Query 146450 CGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT-CGCA 146508
| || || |||||||| | |||| ||||| ||||||||| | |||| ||||| ||
Sbjct 610048 CATCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGGG 610107
Query 146509 GCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAA 146566
| || | | ||| ||||||||| || ||||| ||||||| || || |||||||
Sbjct 610108 CCTCCTGGACCGGG-TAGTGGTTGACATCAATGATTCTGTTGAGGTTGCGAACGACAA 610164
>seq54
Length=312047
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| ||||| || | || ||||| || || || ||||| ||| |
Sbjct 98810 CCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 98751
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| ||||| ||| |||||| |||||||| ||||| ||
Sbjct 98750 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 98691
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||||| | |||| |||||| | ||| ||
Sbjct 98690 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 98631
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || || || || || || || || || |||||||||
Sbjct 98630 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATG 98583
>seq10
Length=843860
Score = 107 bits (118), Expect = 2e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| ||||| || || |||||| ||| || ||||| |||||
Sbjct 384180 GTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAGCTGCTTTCCG 384121
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | ||||| |||||||| |||||||| ||||||||||||||| || || |||
Sbjct 384120 GCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTC 384061
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| ||||||| ||||| || | || | || || || |||| ||
Sbjct 384060 ACGTTG-TCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTTCCAGTCAATGT 384002
Query 127096 TTTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 384001 CTTGACGAAGATCTGCAT 383984
Score = 95.1 bits (104), Expect = 1e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||| || | || ||||| || ||||||||||| |||
Sbjct 383703 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAG 383644
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || |||||| |||| | |||||||| ||||||||
Sbjct 383643 AGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGG 383584
Query 127007 ATGCCCTCCTTGTCC 127021
|| ||||||||||||
Sbjct 383583 ATACCCTCCTTGTCC 383569
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975
||| ||||| || || || |||||||||| || |||||| || || | || |||||
Sbjct 384409 CGTTGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCCAATTGCTTTCC 384350
Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035
||| | || | ||||||||||| || || |||||||||||||| ||| ||| |||
Sbjct 384349 AGCAAAAATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCTTGGATCTTCGACTT 384290
Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| | || | ||||||| | ||| || || | || | || || || |||| ||
Sbjct 384289 AACATTGTCAATCGTGTCCGAAGACTCAACCTCCAACGTAATTGTCTTTCCAGTCAACGT 384230
Query 127096 TTTTACAAAAATCTGCAT 127113
|| || || || |||||
Sbjct 384229 CTTGACGAAGATTTGCAT 384212
>seq14
Length=768254
Score = 86.0 bits (94), Expect = 6e-12
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| ||| || ||||| || || ||| |||||
Sbjct 490602 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 490661
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
|| |||||||| || || || ||||||||||||||| ||| || ||||| | |||
Sbjct 490662 AAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 490721
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| ||||| | |||||| || | ||| | || || || ||||| || || || |||
Sbjct 490722 ATCGTGTCTGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 490781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475497542819520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |