Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq11 122 8e-23 seq54 114 1e-20 seq10 107 2e-18 seq14 86.0 6e-12 >seq11 Length=827760 Score = 122 bits (134), Expect = 8e-23 Identities = 356/538 (66%), Gaps = 13/538 (2%) Strand=Plus/Plus Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093 || ||| |||||| |||| | ||| | ||||||| || ||||||||||| || || || Sbjct 609635 CATGTCGACGAGGTCCTTCAAGAGCCATGGGTTGACGACTTGAAACTCGCCAGCAAGGAC 609694 Query 146094 GCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTG 146153 || | | || | |||| |||| | |||||||| |||| ||||| || | ||||| Sbjct 609695 ACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTG 609754 Query 146154 CGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTT 146212 | || | || || |||||| ||| || |||| |||||| | || ||||| | || Sbjct 609755 AGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTT 609814 Query 146213 GAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGT 146272 | |||| ||| || | ||| | ||| | |||||| ||| | | ||| | Sbjct 609815 G-ATCTGCTCCTTCAGAGCGTCCCAGTCCCAGA---GATCCGAGGGCTTAACATTCCACA 609870 Query 146273 TGTCGTAATGCATAGTGCC--GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACC 146330 ||||||| || | | |||| | | |||||||| | |||||||| | || ||||| Sbjct 609871 TGTCGTACTGGAGAATGCCCTGAGAAACAGGGG--AACCCTCGTACGTCTGGTAGGGACC 609928 Query 146331 GTCGATCTTGGCCAGTTCGCAGCTAGCT-TCCAGAGCCGAAAAGTATATGGTCTCCGCGA 146389 || ||| |||| | ||| | | | || || | | ||| || ||||| | Sbjct 609929 CTCCTCCTTAGCCAACT-GCACCGACATAGTAAGGGCAGCATGGTAGATTGTCTCGAATA 609987 Query 146390 TCATGTAGTTGACGCTCCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGG 146449 || | | ||||| | | || || ||| |||| || |||| || |||| Sbjct 609988 TCTTCTTGTTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGAGCCAAGAAGG 610047 Query 146450 CGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT-CGCA 146508 | || || |||||||| | |||| ||||| ||||||||| | |||| ||||| || Sbjct 610048 CATCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGGG 610107 Query 146509 GCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAA 146566 | || | | ||| ||||||||| || ||||| ||||||| || || ||||||| Sbjct 610108 CCTCCTGGACCGGG-TAGTGGTTGACATCAATGATTCTGTTGAGGTTGCGAACGACAA 610164 >seq54 Length=312047 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||||| || || || ||||| ||| | Sbjct 98810 CCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 98751 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||| ||| |||||| |||||||| ||||| || Sbjct 98750 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 98691 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | ||| || Sbjct 98690 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 98631 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || || || || || || || || ||||||||| Sbjct 98630 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATG 98583 >seq10 Length=843860 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| || || |||||| ||| || ||||| ||||| Sbjct 384180 GTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAGCTGCTTTCCG 384121 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||| |||||||| |||||||| ||||||||||||||| || || ||| Sbjct 384120 GCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTC 384061 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||||| ||||| || | || | || || || |||| || Sbjct 384060 ACGTTG-TCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTTCCAGTCAATGT 384002 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 384001 CTTGACGAAGATCTGCAT 383984 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| || ||||||||||| ||| Sbjct 383703 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAG 383644 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || |||||| |||| | |||||||| |||||||| Sbjct 383643 AGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGG 383584 Query 127007 ATGCCCTCCTTGTCC 127021 || |||||||||||| Sbjct 383583 ATACCCTCCTTGTCC 383569 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || |||||||||| || |||||| || || | || ||||| Sbjct 384409 CGTTGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCCAATTGCTTTCC 384350 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| | || | ||||||||||| || || |||||||||||||| ||| ||| ||| Sbjct 384349 AGCAAAAATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCTTGGATCTTCGACTT 384290 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | || | ||||||| | ||| || || | || | || || || |||| || Sbjct 384289 AACATTGTCAATCGTGTCCGAAGACTCAACCTCCAACGTAATTGTCTTTCCAGTCAACGT 384230 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 384229 CTTGACGAAGATTTGCAT 384212 >seq14 Length=768254 Score = 86.0 bits (94), Expect = 6e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| ||| || ||||| || || ||| ||||| Sbjct 490602 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 490661 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 490662 AAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 490721 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| || | ||| | || || || ||||| || || || ||| Sbjct 490722 ATCGTGTCTGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 490781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497542819520