Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq11 212 8e-50 seq6 111 2e-19 >seq11 Length=827760 Score = 212 bits (234), Expect = 8e-50 Identities = 1159/1834 (63%), Gaps = 47/1834 (3%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||||||||| || |||| || || ||||||||||| |||||||| || | Sbjct 609328 TGAACTGAATGGGCGCAGCAGCAGCCTGTGTGCGCAGGTAGTACATGCCCGTCTTCAGAC 609387 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 | |||||||| || | ||||| || | |||| | || || | |||| Sbjct 609388 CGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATAGTCGGGTCCTTCATGT 609447 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 || ||| | || || || ||||||||| || || || || ||||| | | Sbjct 609448 GGATGTTAAGGGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGTA--- 609504 Query 115706 CATCCTTCATCTTG---ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGA 115762 || | | || | |||||||| ||||| |||| | ||| | || || | Sbjct 609505 CAACGGTACGCTGGGAGATTTCCCAAACAGTCTTGTACAATGCCTTCACCTCGGTAGGAA 609564 Query 115763 TATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGA---TCCTTCATATCCT 115819 | | ||| || |||||||| ||| || | | |||| | | ||||||| | | Sbjct 609565 TGTTGGGGATGTTCTGGATAGA---ACCGTTCTCGGCAATGATACGGTTCTTCATAGCAT 609621 Query 115820 TTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACT 115879 ||||| ||||| || | ||| |||| || ||| ||||| || ||||| Sbjct 609622 CGGACCACAGACCCATGTCGACGAGGTCCTTCAAGAGCCATGGGTTGACGACTTGAAACT 609681 Query 115880 CACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGT 115939 | || || ||| || | | || ||||||| ||||| ||||| ||||||||||||| Sbjct 609682 CGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGT 609741 Query 115940 TACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGA 115999 | |||||||| || | ||| ||| || |||||||| || | ||| || |||||||| Sbjct 609742 TGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGA 609801 Query 116000 GACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCC 116059 ||| | | | || | ||||| || ||||||||||| || | | || Sbjct 609802 CACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAGAGATCCGAGGGCTTAA 609861 Query 116060 CCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCAT 116119 | | |||||| || ||||||| || || || || | || || ||||| | |||| | Sbjct 609862 CATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGT 609921 Query 116120 ATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG--AGGGCTGCGTGATACATTGT 116177 | || ||||| ||| ||||| | | | | | | ||||| || || || ||||| Sbjct 609922 AGGGACCCTCCTCCTTAGCCAA--CTGCACCGACATAGTAAGGGCAGCATGGTAGATTGT 609979 Query 116178 CTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAA 116237 ||| || || || | | || || || || || | | ||| Sbjct 609980 CTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGAGC 610039 Query 116238 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 116297 | || ||||||| ||||| || |||||||| ||||| ||||| || | ||| || Sbjct 610040 CAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATGTTGCT 610099 Query 116298 CTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGT 116357 || || || || || || || || ||| || | || || || || Sbjct 610100 GTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTTGCGAAC 610159 Query 116358 GACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG-- 116415 |||||||| |||| || || ||||| | | | || | | | ||| | | | Sbjct 610160 GACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA---GACACCCTCGTTGTAGTC 610216 Query 116416 -ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 116474 || | | || | ||| | || ||||| |||||||||| | ||| || | | Sbjct 610217 AACGAATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGA 610276 Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 |||||| || || || || || | || || || ||||| |||| |||||| || | Sbjct 610277 GTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTG-GT 610335 Query 116535 TGACTTTG-TGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGG 116593 || |||| ||| ||||||||||||||||| | || | || ||||| ||||| | Sbjct 610336 TGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAG 610395 Query 116594 ACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAG--TGGCGTTGGCTCGCCCCTC 116651 || ||| || || | ||| | | ||| | || | ||| || |||| | Sbjct 610396 CCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTAAGAGTCTTGCG-ACCCTTGCCCAT- 610453 Query 116652 CTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTG 116710 || |||||||| ||| | |||||| ||||| ||| || ||| || | || || | Sbjct 610454 CTGTTCGTACTTCTCGTATAAGGCCTCGAACTCCTCA-CCGTAGCAGTCGGCAAGACCAG 610512 Query 116711 GTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 116770 | || || || || | |||| ||| | || || || || | ||||||||||| Sbjct 610513 GGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGA 610572 Query 116771 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 116830 | || |||||||| || || ||| || || || ||| | ||||| | || || | Sbjct 610573 GATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGT 610632 Query 116831 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890 | |||| || |||||||| | || ||| |||||||| || || || || | || | Sbjct 610633 TCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAA 610692 Query 116891 TTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATA 116944 | || | |||| ||| |||||| || |||| || || ||||| | Sbjct 610693 AAGCACC---GGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGA 610749 Query 116945 CGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGT 117004 | || ||||| |||| |||||| | || |||||| || || ||| ||| | Sbjct 610750 CACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGG 610809 Query 117005 TGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGC 117064 | || | || ||||| || | |||||| || || ||| ||| ||||| ||||| Sbjct 610810 TAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGC 610869 Query 117065 ACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC 117124 | | |||| || |||| || || ||||| ||||| | || | ||| ||||||| Sbjct 610870 AGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGC 610929 Query 117125 AGCTCGACATTTGTGGCCTT--GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGAT 117182 | |||| |||| ||| || ||||||||||||||||| || || | ||||| | Sbjct 610930 AAGAAGACAGCTGTG--CTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGT 610987 Query 117183 GAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCG 117240 || | | |||| |||||| | ||||||||| | ||| || || || || Sbjct 610988 GA--AGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCC 611045 Query 117241 TGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCG 117300 || || | | ||| ||||| | ||||| |||||| | || | | || || Sbjct 611046 CAGATGCCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCA 611105 Query 117301 AGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 117334 ||| || ||||||| ||||||||||||||| Sbjct 611106 AGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGA 611139 >seq6 Length=1110370 Score = 111 bits (122), Expect = 2e-19 Identities = 332/507 (65%), Gaps = 24/507 (5%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || ||||| || |||||||| ||||| ||| | ||| |||||||||||| Sbjct 71535 GTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATATTCTCCAT 71476 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCC-CAATCTGTTTGAG 127344 ||| || || ||||| || || ||| | |||| || ||| | | Sbjct 71475 AAAGTCGAAGGGGTTGGAAGACTTGTAAACCTTGTCGTTGCCAAGAGCAACC------AA 71422 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 ||| || || | |||| |||||||||||| |||| | |||||||| || | || Sbjct 71421 GAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAG 71362 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || || || || ||| | |||| ||| |||||| | || || || | ||| Sbjct 71361 GGCGCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCATCGACAATGAT 71302 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTC---TATTGCGTAAAGTCTTGAAGAGTTCCACAGC 127521 | | | ||| | | | || | | ||| | | | | ||| || || Sbjct 71301 GTCCTCGATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGGGAGTACAGGAGG--CAG-GC 71245 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 || || ||| |||||||||||||| |||||||| || || ||||| |||||| || Sbjct 71244 GAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGACCGGG 71185 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 |||||| || |||||||| | |||||| || | || | ||| |||||| || || Sbjct 71184 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAAATACC 71125 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---AAA 127698 ||| ||| ||||| |||| | ||||| || ||||| |||||| ||| || Sbjct 71124 CTCGACAGCAGCGAAGGCAACCAAACGCTGAGCGAAGGA---GGACTTCTCATCGCTAAT 71068 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTT 127725 |||||| | ||||| | ||||| || Sbjct 71067 CCACTTGAGGGCCCAGTCGGCCTTCTT 71041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613502997475680