Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq11 212 8e-50
seq6 111 2e-19
>seq11
Length=827760
Score = 212 bits (234), Expect = 8e-50
Identities = 1159/1834 (63%), Gaps = 47/1834 (3%)
Strand=Plus/Plus
Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585
||||||||||||| || |||| || || ||||||||||| |||||||| || |
Sbjct 609328 TGAACTGAATGGGCGCAGCAGCAGCCTGTGTGCGCAGGTAGTACATGCCCGTCTTCAGAC 609387
Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645
| |||||||| || | ||||| || | |||| | || || | ||||
Sbjct 609388 CGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATAGTCGGGTCCTTCATGT 609447
Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705
|| ||| | || || || ||||||||| || || || || ||||| | |
Sbjct 609448 GGATGTTAAGGGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGTA--- 609504
Query 115706 CATCCTTCATCTTG---ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGA 115762
|| | | || | |||||||| ||||| |||| | ||| | || || |
Sbjct 609505 CAACGGTACGCTGGGAGATTTCCCAAACAGTCTTGTACAATGCCTTCACCTCGGTAGGAA 609564
Query 115763 TATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGA---TCCTTCATATCCT 115819
| | ||| || |||||||| ||| || | | |||| | | ||||||| | |
Sbjct 609565 TGTTGGGGATGTTCTGGATAGA---ACCGTTCTCGGCAATGATACGGTTCTTCATAGCAT 609621
Query 115820 TTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACT 115879
||||| ||||| || | ||| |||| || ||| ||||| || |||||
Sbjct 609622 CGGACCACAGACCCATGTCGACGAGGTCCTTCAAGAGCCATGGGTTGACGACTTGAAACT 609681
Query 115880 CACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGT 115939
| || || ||| || | | || ||||||| ||||| ||||| |||||||||||||
Sbjct 609682 CGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGT 609741
Query 115940 TACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGA 115999
| |||||||| || | ||| ||| || |||||||| || | ||| || ||||||||
Sbjct 609742 TGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGA 609801
Query 116000 GACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCC 116059
||| | | | || | ||||| || ||||||||||| || | | ||
Sbjct 609802 CACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAGAGATCCGAGGGCTTAA 609861
Query 116060 CCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCAT 116119
| | |||||| || ||||||| || || || || | || || ||||| | |||| |
Sbjct 609862 CATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGT 609921
Query 116120 ATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG--AGGGCTGCGTGATACATTGT 116177
| || ||||| ||| ||||| | | | | | | ||||| || || || |||||
Sbjct 609922 AGGGACCCTCCTCCTTAGCCAA--CTGCACCGACATAGTAAGGGCAGCATGGTAGATTGT 609979
Query 116178 CTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAA 116237
||| || || || | | || || || || || | | |||
Sbjct 609980 CTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGAGC 610039
Query 116238 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 116297
| || ||||||| ||||| || |||||||| ||||| ||||| || | ||| ||
Sbjct 610040 CAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATGTTGCT 610099
Query 116298 CTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGT 116357
|| || || || || || || || ||| || | || || || ||
Sbjct 610100 GTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTTGCGAAC 610159
Query 116358 GACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG-- 116415
|||||||| |||| || || ||||| | | | || | | | ||| | | |
Sbjct 610160 GACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA---GACACCCTCGTTGTAGTC 610216
Query 116416 -ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 116474
|| | | || | ||| | || ||||| |||||||||| | ||| || | |
Sbjct 610217 AACGAATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGA 610276
Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534
|||||| || || || || || | || || || ||||| |||| |||||| || |
Sbjct 610277 GTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTG-GT 610335
Query 116535 TGACTTTG-TGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGG 116593
|| |||| ||| ||||||||||||||||| | || | || ||||| ||||| |
Sbjct 610336 TGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAG 610395
Query 116594 ACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAG--TGGCGTTGGCTCGCCCCTC 116651
|| ||| || || | ||| | | ||| | || | ||| || |||| |
Sbjct 610396 CCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTAAGAGTCTTGCG-ACCCTTGCCCAT- 610453
Query 116652 CTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTG 116710
|| |||||||| ||| | |||||| ||||| ||| || ||| || | || || |
Sbjct 610454 CTGTTCGTACTTCTCGTATAAGGCCTCGAACTCCTCA-CCGTAGCAGTCGGCAAGACCAG 610512
Query 116711 GTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 116770
| || || || || | |||| ||| | || || || || | |||||||||||
Sbjct 610513 GGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGA 610572
Query 116771 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 116830
| || |||||||| || || ||| || || || ||| | ||||| | || || |
Sbjct 610573 GATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGT 610632
Query 116831 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890
| |||| || |||||||| | || ||| |||||||| || || || || | || |
Sbjct 610633 TCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAA 610692
Query 116891 TTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATA 116944
| || | |||| ||| |||||| || |||| || || ||||| |
Sbjct 610693 AAGCACC---GGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGA 610749
Query 116945 CGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGT 117004
| || ||||| |||| |||||| | || |||||| || || ||| ||| |
Sbjct 610750 CACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGG 610809
Query 117005 TGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGC 117064
| || | || ||||| || | |||||| || || ||| ||| ||||| |||||
Sbjct 610810 TAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGC 610869
Query 117065 ACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC 117124
| | |||| || |||| || || ||||| ||||| | || | ||| |||||||
Sbjct 610870 AGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGC 610929
Query 117125 AGCTCGACATTTGTGGCCTT--GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGAT 117182
| |||| |||| ||| || ||||||||||||||||| || || | ||||| |
Sbjct 610930 AAGAAGACAGCTGTG--CTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGT 610987
Query 117183 GAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCG 117240
|| | | |||| |||||| | ||||||||| | ||| || || || ||
Sbjct 610988 GA--AGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCC 611045
Query 117241 TGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCG 117300
|| || | | ||| ||||| | ||||| |||||| | || | | || ||
Sbjct 611046 CAGATGCCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCA 611105
Query 117301 AGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 117334
||| || ||||||| |||||||||||||||
Sbjct 611106 AGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGA 611139
>seq6
Length=1110370
Score = 111 bits (122), Expect = 2e-19
Identities = 332/507 (65%), Gaps = 24/507 (5%)
Strand=Plus/Minus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| | || ||||| || |||||||| ||||| ||| | ||| ||||||||||||
Sbjct 71535 GTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATATTCTCCAT 71476
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCC-CAATCTGTTTGAG 127344
||| || || ||||| || || ||| | |||| || ||| | |
Sbjct 71475 AAAGTCGAAGGGGTTGGAAGACTTGTAAACCTTGTCGTTGCCAAGAGCAACC------AA 71422
Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404
||| || || | |||| |||||||||||| |||| | |||||||| || | ||
Sbjct 71421 GAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAG 71362
Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464
| || || || || ||| | |||| ||| |||||| | || || || | |||
Sbjct 71361 GGCGCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCATCGACAATGAT 71302
Query 127465 GGCGTGAATAGTGTCCACCCCAGGTC---TATTGCGTAAAGTCTTGAAGAGTTCCACAGC 127521
| | | ||| | | | || | | ||| | | | | ||| || ||
Sbjct 71301 GTCCTCGATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGGGAGTACAGGAGG--CAG-GC 71245
Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581
|| || ||| |||||||||||||| |||||||| || || ||||| |||||| ||
Sbjct 71244 GAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGACCGGG 71185
Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641
|||||| || |||||||| | |||||| || | || | ||| |||||| || ||
Sbjct 71184 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAAATACC 71125
Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---AAA 127698
||| ||| ||||| |||| | ||||| || ||||| |||||| ||| ||
Sbjct 71124 CTCGACAGCAGCGAAGGCAACCAAACGCTGAGCGAAGGA---GGACTTCTCATCGCTAAT 71068
Query 127699 CCACTTCATCGCCCACTGTGCCTTTTT 127725
|||||| | ||||| | ||||| ||
Sbjct 71067 CCACTTGAGGGCCCAGTCGGCCTTCTT 71041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613502997475680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |