Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq54 156 5e-33 seq14 129 7e-25 seq10 125 8e-24 >seq54 Length=312047 Score = 156 bits (172), Expect = 5e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| || | || |||||| ||||| ||||||||||| || ||||| | Sbjct 98799 ACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 98740 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| ||||||||||| |||||||| |||| |||||||||||||| || | || |||||| Sbjct 98739 GTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 98680 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| | | | |||||| ||| ||||| || | ||||| Sbjct 98679 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGAT 98620 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || ||||| || || || || ||||| ||||| Sbjct 98619 AGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 98584 >seq14 Length=768254 Score = 129 bits (142), Expect = 7e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || ||||| | || |||||||||||||||||||| | Sbjct 490600 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 490659 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||||||||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 490660 TCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 490719 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | |||||| || || || || | || ||||| || |||||||| || || || | Sbjct 490720 CGATCGTGTCTGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 490779 Query 46584 A 46584 | Sbjct 490780 A 490780 >seq10 Length=843860 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || | |||||| | || || |||||||| |||||||| Sbjct 384175 CTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAA 384116 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||||| || | || |||||||||| ||||| ||| | ||| Sbjct 384115 AATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCA-CGT 384057 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||||| || |||| |||||| || || || |||| || || | Sbjct 384056 TGTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTTCCAGTCAATGTCTTGA 383997 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 383996 CGAAGATCTGCAT 383984 Score = 100 bits (110), Expect = 3e-16 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || |||||||||||||| || ||||| |||| || ||||||||||| ||||| Sbjct 383668 CTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAA 383609 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | | |||||||||| ||||| ||| | ||| Sbjct 383608 GATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTCA-CGT 383550 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | | || || || || || |||| |||||||| ||||| || Sbjct 383549 TGTCGATAGTATCAGAGGACTCGACCTCCAGAGTGATGGTCTTGCCGGT 383501 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || |||||||| | || || ||||||||||| || || Sbjct 383946 TCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 383887 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||||||| ||||| || | || | || ||||||||| ||||| ||||| | Sbjct 383886 ATCAAGCGTTGCTGATCAGGAGGGATGCCTTCCTTGTCCTGAATCTTAGACTTGACATTG 383827 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || || || || || || | |||||||| ||||| || || || || || Sbjct 383826 TCGATGGTATCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTAAGGGTCTTGAC 383768 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||| || ||||| |||| || | ||||| || || || Sbjct 384403 CTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAA 384344 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | || ||||||||| ||||||| ||| | | Sbjct 384343 AATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCTTGGATCTTCGACTTAACATT 384284 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || |||| ||| || || || || |||| ||| || || Sbjct 384283 GTCAATCGTGTCCGAAGACTCAACCTCCAACGTAATTGTCTTTCCAGTCAACGTCTTGAC 384224 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 384223 GAAGATTTGCAT 384212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565234528116960