Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6 145 8e-30 seq54 131 2e-25 seq10 102 8e-17 seq14 96.9 3e-15 >seq6 Length=1110370 Score = 145 bits (160), Expect = 8e-30 Identities = 198/276 (72%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||| ||||| ||| || | || ||||| | ||||||||| || || || Sbjct 70918 GTAGGTGTCAATGAGCAGCGAGTAAGTCTCGGAGTGGATGTTCTCCATCATAATCTGGAA 70859 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| || ||||| ||| || || || ||| |||||||||| || Sbjct 70858 GCCGTAGAAGCAGCGGGCCTCAGGCACTTGAACCTCGCCGCTGAAGCGCTCGACCAAGTT 70799 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 || ||||||||||||||| |||||||| ||||| || | |||| |||||| | Sbjct 70798 CTCATTGACGATGCCGTCGGAAGCGGCGAAGAAGGCGAGAATGTGCGAGATGAAGTACTT 70739 Query 133347 CTCGTTGTC---GTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | || | || | | ||||||| || |||||| ||||| || | |||||| Sbjct 70738 CTCATCCTCATTGATCTTGTTGTTCCAGTCGTGCAGGTCCTTAGACAGATCAATCTCCTC 70679 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || || |||||||| || |||||||| Sbjct 70678 TGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 70643 Score = 114 bits (126), Expect = 1e-20 Identities = 342/519 (66%), Gaps = 18/519 (3%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| ||||| ||||| || ||| | || || ||||| || || || || || | Sbjct 71553 CATAACGCCGGCCTTTTGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACC 71494 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || ||| || | |||||| || |||||||||| | ||||| |||| | | Sbjct 71493 CAGGGAGATATTCTCCATAAAGTCGAAGGGGTTGGAAGACTTGTAAACCTTGTCGTTGCC 71434 Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT--GGTTTCGCAA 132768 || | || | || | |||||| |||||||| ||||| ||| ||| |||| | | Sbjct 71433 AAGAGCAACCAAGAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTT--GGAG 71376 Query 132769 TTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGAC 132827 || | || ||||| |||| || || || || || || || ||||| || ||| Sbjct 71375 TTCATGCCAAGCAGGGCGCAA-GGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGAC 71317 Query 132828 CGCGTCGGTGACGATTTCCC---TAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTT 132884 || ||| | ||| ||| |||| || ||| || || | | | || Sbjct 71316 GGCATCGACAATGATGTCCTCGATAACCTGCTT---GCTGGGGCGGTTCTTGAGGTGGGA 71260 Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 | ||| | ||| || |||||| |||| |||||||| | || ||||| |||||| Sbjct 71259 GTACAGGAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGA 71200 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| |||| ||||||||||||||||| || |||||||| || |||| |||||| || Sbjct 71199 GAATGTCAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACC 71140 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CTT 133063 ||||| | |||||||| || ||||| || |||| |||| |||| | || ||| Sbjct 71139 ACTGAAGAAAATACCCTCGACAGCAGCGAAGGCAACCAAACGCTGAGCGAAGGAGGACTT 71080 Query 133064 CT--TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 || | ||| ||||| || ||||| |||||||| Sbjct 71079 CTCATCGCT---AATCCACTTGAGGGCCCAGTCGGCCTT 71044 >seq54 Length=312047 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || |||||| | || || ||| | || Sbjct 98584 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCGTCC 98643 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || ||| ||||||| Sbjct 98644 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 98703 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || |||| |||||||| |||||||||| Sbjct 98704 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 98763 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || || ||||||||||| || | || || Sbjct 98764 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTGCGTGGTGG 98810 >seq10 Length=843860 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||| | || || || || || || | || || ||| | | Sbjct 384212 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACAATTACGTTGGAGGTTGAGTCTTCG 384271 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | |||| || |||| ||||| ||||| || ||| | || || Sbjct 384272 GACACGATTGACAATG-TTAAGTCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGATCA 384330 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| || || || || |||| |||| |||||||| | ||| ||||| Sbjct 384331 GCAGCGTCTCATTTTTGCTGGAAAGCAATTGGAGGACGGTCGCACCCTGAGCGATTACAA 384390 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | ||||| || | || || ||| || | ||||| Sbjct 384391 CATCCAGAAGGAGTCAACGCTTCACCTCGTCCTCCGTCTGCGTGGCGG 384438 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 |||| | |||| || || || || ||||| |||||||| |||| || ||| || | || Sbjct 383759 CAAACAGTCGTCAAGACCCTTACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCTGAT 383818 Query 38307 AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAG 38366 | | | | | | || || || | ||||| || || || || | || || || Sbjct 383819 ACCATCGACAATGTCAAGTCTAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAGCAA 383878 Query 38367 CGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATC 38426 || | || | || ||||| ||||| || || | ||||| ||| |||||||||||| Sbjct 383879 CGCTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCGGACTACAACATC 383938 Query 38427 CAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| | || || || |||||||| ||| Sbjct 383939 CAAAAGGAATCCACCCTTCACTTGGTGCTCCGT 383971 >seq14 Length=768254 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| || | |||| | Sbjct 490780 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCAGACACGATC 490721 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| | ||||| ||||| | Sbjct 490720 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTG 490661 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | ||||||||| ||||||||||||||| ||| Sbjct 490660 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 490601 Query 38433 G 38433 | Sbjct 490600 G 490600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169373816320