Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq3 338 8e-88
seq1 140 4e-28
seq34 105 8e-18
>seq3
Length=1516797
Score = 338 bits (374), Expect = 8e-88
Identities = 689/1021 (67%), Gaps = 8/1021 (1%)
Strand=Plus/Plus
Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081
|||||||| ||||| | || ||||| || || |||||||||||||| || | || ||
Sbjct 664262 ATGGCGGCCTGGACAGCGGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTG 664321
Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141
| || || ||||| || || || || | | | || || ||||| || || ||
Sbjct 664322 GGCTCCTTGCCGTTGAAGTAGTCGGAGATAAGCTTCTGGATGCGGGGGATACGGGTGGAA 664381
Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201
|| ||||||| ||||| || | || | || || |||||||| | ||| ||
Sbjct 664382 CCTCCGACCAGGACGATCTCGTGGACCTGGGACTTGTCGATCTTGGCGTCGGTGAGGACG 664441
Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261
||||| || | || ||||||| |||| || || |||||||| || |||
Sbjct 664442 CGGTCGACGGGCTGGATGGTGGAGCGGAACAGGTCCTGGCAAAGCTCCTCAAAGCGGGCA 664501
Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321
||||| ||||| || ||||| |||| ||| ||||| | ||| || || || || | ||
Sbjct 664502 CGGGTGATGGAGGTGTAGAAGTCAATGCCCTCGTAGAGCGAGTCGATCTCGATAGAGGTC 664561
Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381
|| || | ||| || | || ||||| || ||||| || || || || | ||| || ||
Sbjct 664562 TGGGCAGACGAGGAAAGAGTGCGCTTGGCACGCTCGCAAGCGGTACGGAGACGGCGCAGA 664621
Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGT 7441
|| || | ||| ||| | ||| ||||| || || || || ||||| | ||||||
Sbjct 664622 GCGCGGGCGTTGGTGGATAGATCCTTCTTGTGCTTGCGCTTGAACTCGTTGACGAAGTGG 664681
Query 7442 CGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTG 7501
|| ||| | ||||| || |||||||||||||| || || || ||||| | ||
Sbjct 664682 TTAACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGGGTGTCACCAGCGGTAGACTTA 664741
Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561
|| || ||||| || | |||||| | | | || ||||| || ||||||||||| ||
Sbjct 664742 ACCTCGAAGATGCCCTCCTCAATGGTCAGGAGGGACACATCGAAAGTACCACCACCAAGA 664801
Query 7562 TCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCC 7621
|| || ||||| ||||| || | || ||||| || |||||||| ||||| ||
Sbjct 664802 TCGAAGATGAGAACGTTGCGCTCACCCTCGGCCTTCTTGTCAAGACCGTAGGCGATGGCA 664861
Query 7622 GCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681
||||| || || || || || || || || ||| || || |||||| | || ||
Sbjct 664862 GCCGCGGTGGGCTCGTTGATGATGCGCAGGACGTTGAGACCGGCAATAAGACCAGCGTCC 664921
Query 7682 TTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTG 7741
|| ||||| || || || || ||||| |||||||| ||||| || | ||| |||| ||
Sbjct 664922 TTGGTCGCCTGACGCTGAGAGTCGTTGAAGTAGGCGGGGACAGTGATGACAGCGTTGTTG 664981
Query 7742 ACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAA 7801
|| | ||| || |||| || ||| | || ||| ||||| |||||||| | ||
Sbjct 664982 ACCTGGCCACCCAGGAACGACTCAGCGGTCTCACGCATCTTGGTGAGAACCATGGCAGAG 665041
Query 7802 ATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTA 7861
||||| |||| | || || || || || || || ||||| | ||| || ||
Sbjct 665042 ATCTCCTCAGGGGTGAAGGTCTTGGTCTCGCCCTTGAACTCAACCTGAATGGCAGGCTT- 665100
Query 7862 TCCGCAGCAC-CGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTG 7920
|| | | | ||| ||||| ||| | | ||||||||| | || |||| |
Sbjct 665101 ---GCCGTTCTTGTCGATGACCTTGAACGGGAAGTGCTTCATATCGGCCTGCACCTCGTT 665157
Query 7921 GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCAT 7980
|||| ||||| | ||||| |||||||| || || || || ||||| | ||||||||
Sbjct 665158 GTCCTGGAACTTGCGACCGATCAGACGCTTGGCGTCGAACACGGTGTTGTGCGGGTTCAT 665217
Query 7981 GGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGAC 8040
|| |||||||| || || || ||||| | ||| || | || || ||||||||
Sbjct 665218 CGCGACCTGGTTCTTGGCGGCATCTCCGATCAAACGCTC---TGTGTCGGTGAACGCGAC 665274
Query 8041 G 8041
|
Sbjct 665275 G 665275
>seq1
Length=2214490
Score = 140 bits (154), Expect = 4e-28
Identities = 344/516 (67%), Gaps = 13/516 (3%)
Strand=Plus/Plus
Query 7247 TCCTCAAAACGTGCACGGGTAA--TGGATG-TATAGAAATCAACGCCGTCGTATAACGAA 7303
||||| ||||| |||||||| | ||| || | ||| ||| || ||| | | ||
Sbjct 1122566 TCCTCGAAACGAGCACGGGTGAGCTGGGTGGTGTAGTCCTCA---CCATCGAAGAGAGAG 1122622
Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361
|| || |||||||| || || || || | ||| || ||||| |||||||| || |
Sbjct 1122623 TCGATCTCAATGGTGGTCTGGGCACCGCTGGAGAGG--GTACGCTTGGCGCGCTCGCAAG 1122680
Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421
| || || | |||||| |||||||| |||| || || | || ||||| || || |
Sbjct 1122681 CAGTGCGAAGACGACGGAGGGCACGGGGGTCGCCAGAGAGGTCCTTCTTGGTCTTGCGCT 1122740
Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481
|| || | | |||| || || | | ||||| || | ||||||||||| |
Sbjct 1122741 GGAAGTCCTTCTTGCAGTGGTCCAGAAGGTTGGTGTCGAAGTCCTGGCCACCCAAGTGGG 1122800
Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541
| || || || || || ||||| |||| ||| || | ||||| | | |||||||
Sbjct 1122801 TGTCACCGGCAGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAAACAT 1122860
Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCT 7598
| || ||||||||||||| ||| | || || ||||| || | | | |||
Sbjct 1122861 CGAAAGTACCACCACCCAAGTCGTAGATAAGGACGTTGCGCTCCTTGCCAGACTTGCCGG 1122920
Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658
| | |||||||| || || || || || || || || || || ||||| || ||| |
Sbjct 1122921 CACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGA 1122980
Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718
||||||| |||| | ||||| || || || || || || ||||| |||||||| |
Sbjct 1122981 GGCCAGCGATAGCACCGGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCGG 1123040
Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754
|||| || | || || | | || ||||| ||||
Sbjct 1123041 GGACGGTGATAACGGCCTTCTCAACCTTCTTGCCGA 1123076
>seq34
Length=460544
Score = 105 bits (116), Expect = 8e-18
Identities = 222/329 (67%), Gaps = 8/329 (2%)
Strand=Plus/Plus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
|||||| || || ||||| | ||| || || || ||| | ||||| || |||| |||
Sbjct 165973 ATCGAAGTCCTCGCCACCAAGGTGGGTGTCGCCGTTGGTGGACTTGACCTCGAAGACACC 166032
Query 7516 TCCTTCAATGTTTAACAACGAA-ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574
| || | || |||| | | ||| || ||||||||||| || ||| | | | |
Sbjct 166033 GTTCTGGATCTC-AAGAACGGAGATATCGAAGGTACCACCACCAAGATCATAGACGGCGA 166091
Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634
|| || ||||| | ||| || | |||||| || | ||| || || || || |
Sbjct 166092 CGA------CGCGGTCTTCCTCCTTCTCCAAACCGTAGGCCAGAGCGGCGGCAGTGGGCT 166145
Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694
| || | | ||| ||| ||||||||||||||| | ||||| || || || || |
Sbjct 166146 CGTTGACGACACGCAGAACGTTCAGGCCAGCAATCTGACCGGCATCCTTGGTAGCCTGAC 166205
Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754
| || || |||||||||||||| || || || ||||| |||| | |||| ||| ||
Sbjct 166206 GCTGGGAGTCGTTAAAGTAGGCAGGAACAGTGACGACAGCGTTCTTGACGGGCTTCGAGA 166265
Query 7755 GATACGATTCCGCGATATCTTTCATTTTG 7783
| || | || ||| | || ||||| |||
Sbjct 166266 GGTAAGCCTCGGCGGTCTCCTTCATCTTG 166294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635128449340320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |