Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3 338 8e-88 seq1 140 4e-28 seq34 105 8e-18 >seq3 Length=1516797 Score = 338 bits (374), Expect = 8e-88 Identities = 689/1021 (67%), Gaps = 8/1021 (1%) Strand=Plus/Plus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 |||||||| ||||| | || ||||| || || |||||||||||||| || | || || Sbjct 664262 ATGGCGGCCTGGACAGCGGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTG 664321 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 | || || ||||| || || || || | | | || || ||||| || || || Sbjct 664322 GGCTCCTTGCCGTTGAAGTAGTCGGAGATAAGCTTCTGGATGCGGGGGATACGGGTGGAA 664381 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 || ||||||| ||||| || | || | || || |||||||| | ||| || Sbjct 664382 CCTCCGACCAGGACGATCTCGTGGACCTGGGACTTGTCGATCTTGGCGTCGGTGAGGACG 664441 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 ||||| || | || ||||||| |||| || || |||||||| || ||| Sbjct 664442 CGGTCGACGGGCTGGATGGTGGAGCGGAACAGGTCCTGGCAAAGCTCCTCAAAGCGGGCA 664501 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| ||||| || ||||| |||| ||| ||||| | ||| || || || || | || Sbjct 664502 CGGGTGATGGAGGTGTAGAAGTCAATGCCCTCGTAGAGCGAGTCGATCTCGATAGAGGTC 664561 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || || | ||| || | || ||||| || ||||| || || || || | ||| || || Sbjct 664562 TGGGCAGACGAGGAAAGAGTGCGCTTGGCACGCTCGCAAGCGGTACGGAGACGGCGCAGA 664621 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGT 7441 || || | ||| ||| | ||| ||||| || || || || ||||| | |||||| Sbjct 664622 GCGCGGGCGTTGGTGGATAGATCCTTCTTGTGCTTGCGCTTGAACTCGTTGACGAAGTGG 664681 Query 7442 CGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTG 7501 || ||| | ||||| || |||||||||||||| || || || ||||| | || Sbjct 664682 TTAACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGGGTGTCACCAGCGGTAGACTTA 664741 Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561 || || ||||| || | |||||| | | | || ||||| || ||||||||||| || Sbjct 664742 ACCTCGAAGATGCCCTCCTCAATGGTCAGGAGGGACACATCGAAAGTACCACCACCAAGA 664801 Query 7562 TCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCC 7621 || || ||||| ||||| || | || ||||| || |||||||| ||||| || Sbjct 664802 TCGAAGATGAGAACGTTGCGCTCACCCTCGGCCTTCTTGTCAAGACCGTAGGCGATGGCA 664861 Query 7622 GCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681 ||||| || || || || || || || || ||| || || |||||| | || || Sbjct 664862 GCCGCGGTGGGCTCGTTGATGATGCGCAGGACGTTGAGACCGGCAATAAGACCAGCGTCC 664921 Query 7682 TTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTG 7741 || ||||| || || || || ||||| |||||||| ||||| || | ||| |||| || Sbjct 664922 TTGGTCGCCTGACGCTGAGAGTCGTTGAAGTAGGCGGGGACAGTGATGACAGCGTTGTTG 664981 Query 7742 ACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAA 7801 || | ||| || |||| || ||| | || ||| ||||| |||||||| | || Sbjct 664982 ACCTGGCCACCCAGGAACGACTCAGCGGTCTCACGCATCTTGGTGAGAACCATGGCAGAG 665041 Query 7802 ATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTA 7861 ||||| |||| | || || || || || || || ||||| | ||| || || Sbjct 665042 ATCTCCTCAGGGGTGAAGGTCTTGGTCTCGCCCTTGAACTCAACCTGAATGGCAGGCTT- 665100 Query 7862 TCCGCAGCAC-CGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTG 7920 || | | | ||| ||||| ||| | | ||||||||| | || |||| | Sbjct 665101 ---GCCGTTCTTGTCGATGACCTTGAACGGGAAGTGCTTCATATCGGCCTGCACCTCGTT 665157 Query 7921 GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCAT 7980 |||| ||||| | ||||| |||||||| || || || || ||||| | |||||||| Sbjct 665158 GTCCTGGAACTTGCGACCGATCAGACGCTTGGCGTCGAACACGGTGTTGTGCGGGTTCAT 665217 Query 7981 GGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGAC 8040 || |||||||| || || || ||||| | ||| || | || || |||||||| Sbjct 665218 CGCGACCTGGTTCTTGGCGGCATCTCCGATCAAACGCTC---TGTGTCGGTGAACGCGAC 665274 Query 8041 G 8041 | Sbjct 665275 G 665275 >seq1 Length=2214490 Score = 140 bits (154), Expect = 4e-28 Identities = 344/516 (67%), Gaps = 13/516 (3%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAA--TGGATG-TATAGAAATCAACGCCGTCGTATAACGAA 7303 ||||| ||||| |||||||| | ||| || | ||| ||| || ||| | | || Sbjct 1122566 TCCTCGAAACGAGCACGGGTGAGCTGGGTGGTGTAGTCCTCA---CCATCGAAGAGAGAG 1122622 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 || || |||||||| || || || || | ||| || ||||| |||||||| || | Sbjct 1122623 TCGATCTCAATGGTGGTCTGGGCACCGCTGGAGAGG--GTACGCTTGGCGCGCTCGCAAG 1122680 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | || || | |||||| |||||||| |||| || || | || ||||| || || | Sbjct 1122681 CAGTGCGAAGACGACGGAGGGCACGGGGGTCGCCAGAGAGGTCCTTCTTGGTCTTGCGCT 1122740 Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 || || | | |||| || || | | ||||| || | ||||||||||| | Sbjct 1122741 GGAAGTCCTTCTTGCAGTGGTCCAGAAGGTTGGTGTCGAAGTCCTGGCCACCCAAGTGGG 1122800 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || || || || ||||| |||| ||| || | ||||| | | ||||||| Sbjct 1122801 TGTCACCGGCAGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAAACAT 1122860 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCT 7598 | || ||||||||||||| ||| | || || ||||| || | | | ||| Sbjct 1122861 CGAAAGTACCACCACCCAAGTCGTAGATAAGGACGTTGCGCTCCTTGCCAGACTTGCCGG 1122920 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 | | |||||||| || || || || || || || || || || ||||| || ||| | Sbjct 1122921 CACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGA 1122980 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 ||||||| |||| | ||||| || || || || || || ||||| |||||||| | Sbjct 1122981 GGCCAGCGATAGCACCGGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCGG 1123040 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 |||| || | || || | | || ||||| |||| Sbjct 1123041 GGACGGTGATAACGGCCTTCTCAACCTTCTTGCCGA 1123076 >seq34 Length=460544 Score = 105 bits (116), Expect = 8e-18 Identities = 222/329 (67%), Gaps = 8/329 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || || ||||| | ||| || || || ||| | ||||| || |||| ||| Sbjct 165973 ATCGAAGTCCTCGCCACCAAGGTGGGTGTCGCCGTTGGTGGACTTGACCTCGAAGACACC 166032 Query 7516 TCCTTCAATGTTTAACAACGAA-ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 | || | || |||| | | ||| || ||||||||||| || ||| | | | | Sbjct 166033 GTTCTGGATCTC-AAGAACGGAGATATCGAAGGTACCACCACCAAGATCATAGACGGCGA 166091 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 || || ||||| | ||| || | |||||| || | ||| || || || || | Sbjct 166092 CGA------CGCGGTCTTCCTCCTTCTCCAAACCGTAGGCCAGAGCGGCGGCAGTGGGCT 166145 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || | | ||| ||| ||||||||||||||| | ||||| || || || || | Sbjct 166146 CGTTGACGACACGCAGAACGTTCAGGCCAGCAATCTGACCGGCATCCTTGGTAGCCTGAC 166205 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || || |||||||||||||| || || || ||||| |||| | |||| ||| || Sbjct 166206 GCTGGGAGTCGTTAAAGTAGGCAGGAACAGTGACGACAGCGTTCTTGACGGGCTTCGAGA 166265 Query 7755 GATACGATTCCGCGATATCTTTCATTTTG 7783 | || | || ||| | || ||||| ||| Sbjct 166266 GGTAAGCCTCGGCGGTCTCCTTCATCTTG 166294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128449340320