Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq11 280 2e-70
seq6 138 1e-27
>seq11
Length=827760
Score = 280 bits (310), Expect = 2e-70
Identities = 964/1491 (65%), Gaps = 39/1491 (3%)
Strand=Plus/Minus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|| ||| ||||| ||||||| ||||| | || ||| || || | |||| ||
Sbjct 611083 CCCCAGCACATGATCATGCGTGTCGCTGTTGGCATCTGGGGTGACAACGTTGAGCGCGTC 611024
Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731
| ||||| ||| || |||||| | | |||| ||||| | || || ||||||
Sbjct 611023 ATCGAGACCTACAACCTGATGTCGAGCAAGTTCTTCACTCACGCCTCTCCTACACTCTTC 610964
Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791
||||||||||| || | | || |||| ||| |||||| | | | || |||||
Sbjct 610963 AACGCTGGTACCCCCCAAGCACAGCTGTCTTCTTGCTTCCTTGTCGACATGAAAGAGGAC 610904
Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAA--ATCTCAAAGTGGGCTG 111849
|| ||| | || ||||||| ||| |||| | ||| ||| ||||| ||| |||||
Sbjct 610903 TCTATCGAGGGTATTTACGACACCCTCAAG--ACCTGCGCAATGATCTCCAAGATGGCTG 610846
Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAA 111909
|||| || || | || |||| || | || | | ||| ||| || || |
Sbjct 610845 GTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCTCTTACATTGCCGGCACCA 610786
Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969
|||| || | ||||| |||| ||||| || || ||||| ||| || || || |
Sbjct 610785 ATGGCACCTCCAACGGTATCGTTCCCATGCTCCGTGTCTTTAATAACACTGCTCGGTACG 610726
Query 111970 TAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023
| |||| | ||| ||||| | || || | || ||||||| ||||| ||||
Sbjct 610725 TCGACCAGGGTGGCAACAAGCGTCCC---GGTGCTTTTGCCATCTATCTCGAGCCTTGGC 610669
Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083
|||| ||| || | || || | || |||| ||||| || | || |||| ||
Sbjct 610668 ACGCCGATGTCTTCGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGAAGAGGTCCGCG 610609
Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143
||| || || ||| ||||| ||||| || |||||||||||||||||||| || |||
Sbjct 610608 CCCGTGACCTTTTCCTTGCTCTTTGGATCCCTGATCTCTTCATGAAGAGAGTAGAAAAGA 610549
Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203
|| | ||| |||| | || || | || || ||||| |||| | ||||
Sbjct 610548 ACGGAGACTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTTGCCGACTGCTACGGTG 610489
Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGA------GGAAGAAAGTCGGGCGACTGCGA 112257
||||||| || ||| | ||| |||||||| || | |||| |||| |
Sbjct 610488 AGGAGTTCGAGGCCTTATACGAGAAGTACGAACAGATGGGCAAGGGTCGCAAGACTCTTA 610429
Query 112258 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317
|| ||| || | ||| | || || ||| || ||||||||||||| || | |
Sbjct 610428 AGG-CCCAAAAGC-----TCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAACC 610375
Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377
| | ||||| ||||| || || |||| || || || || ||||| ||||| |
Sbjct 610374 CCTTCATGCTCTACAAGGATGCTGCCAACCGCAAAAGCAACCAGAAGAACCTGGGTACCA 610315
Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437
|| || ||||||||||| || || ||| | || | | | || ||| ||||
Sbjct 610314 TCCGTAGCTCCAACCTCTGCACTGAGATCATTGAGTACTCCGCGCCTGACGAGGTCGCTG 610255
Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTT 112496
|||||||||| || || | || | |||| | || || | || || | | |
Sbjct 610254 TGTGTAACCTGGCCTCGCTTGCCTTGCCCACATTCGTTGACTACAACGAGGGTGTC-TAC 610196
Query 112497 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATT 112556
|| | | || |||||||| || || | |||| ||||| |||||| | |||
Sbjct 610195 GACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTCGTTCGCAACCTCAACAGAATCATT 610136
Query 112557 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616
||| || ||||| || || || || || || ||| | ||||| || |||
Sbjct 610135 GATGTCAACCACTACCCGGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGCCCCATT 610076
Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG-CATTTGATTC 112675
||||||||||| || ||||| ||||||| ||| || | || || | | || || ||
Sbjct 610075 GGTCTCGGTGTGCAGGGTCTTGCGGATGCCTTC-TTGGCTCTCCGCATGCCCTTCGAGTC 610017
Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735
||||| || |||| | ||||| |||||||| || || || || |||
Sbjct 610016 TCCTGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACAATCTACCATGCTGCCCTT-- 609959
Query 112736 GGCGAGTTCGG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 112792
| | |||| ||||||| ||| || ||||| || | || | |||||||| ||
Sbjct 609958 -ACTATGTCGGTGCAGTTGGCTAAGGAGGAGGGTCCCTACCAGACGTACGAGGGTTCCCC 609900
Query 112793 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGA 112852
| ||| || || | || || | || |||||| | | | || || | || || ||
Sbjct 609899 TGTTTCTCAGGGCATTCTCCAGTACGACATGTGGAATGTTAAGCCCTCGGATCTCTGGGA 609840
Query 112853 CTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 112912
|||||||||||| ||||| | |||||| || | ||| | || ||| ||| | | ||
Sbjct 609839 CTGGGACGCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTCGC 609780
Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972
|| ||||| || ||| |||| | || |||||||| || ||||| ||||| || |||||
Sbjct 609779 GCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGCCCTA 609720
Query 112973 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCA 113032
||| | ||||| || | | | ||| || || |||||| | |||||| ||
Sbjct 609719 CACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTTCAAGTCGTCAAC--CCA 609662
Query 113033 T--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081
| ||| || | |||||| || || ||||| |||||| | | |||||||
Sbjct 609661 TGGCTCTTGAAGGACCTCGTCGACATGGGTCTGTGGTCCGATGCTATGAAG 609611
>seq6
Length=1110370
Score = 138 bits (152), Expect = 1e-27
Identities = 161/216 (75%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAG 102164
|||||||| || |||| ||||| || || ||||| | |||||| || ||| |||
Sbjct 71023 ACAGTTCCTTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAG 71082
Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224
|| ||||| ||| |||| | | || || || ||| |||||||| |||||| |
Sbjct 71083 TCC---TCCTTCGCTCAGCGTTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGT 71139
Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284
||| ||||| | | || | |||||||||||||| || |||||||| ||||| |||
Sbjct 71140 GGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTC 71199
Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
||||||||||| ||||||||||||||||| || |||
Sbjct 71200 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCAC 71235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620738147914560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |