Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq11 280 2e-70 seq6 138 1e-27 >seq11 Length=827760 Score = 280 bits (310), Expect = 2e-70 Identities = 964/1491 (65%), Gaps = 39/1491 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| | || ||| || || | |||| || Sbjct 611083 CCCCAGCACATGATCATGCGTGTCGCTGTTGGCATCTGGGGTGACAACGTTGAGCGCGTC 611024 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || |||||| | | |||| ||||| | || || |||||| Sbjct 611023 ATCGAGACCTACAACCTGATGTCGAGCAAGTTCTTCACTCACGCCTCTCCTACACTCTTC 610964 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||||||||| || | | || |||| ||| |||||| | | | || ||||| Sbjct 610963 AACGCTGGTACCCCCCAAGCACAGCTGTCTTCTTGCTTCCTTGTCGACATGAAAGAGGAC 610904 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAA--ATCTCAAAGTGGGCTG 111849 || ||| | || ||||||| ||| |||| | ||| ||| ||||| ||| ||||| Sbjct 610903 TCTATCGAGGGTATTTACGACACCCTCAAG--ACCTGCGCAATGATCTCCAAGATGGCTG 610846 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAA 111909 |||| || || | || |||| || | || | | ||| ||| || || | Sbjct 610845 GTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCTCTTACATTGCCGGCACCA 610786 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 |||| || | ||||| |||| ||||| || || ||||| ||| || || || | Sbjct 610785 ATGGCACCTCCAACGGTATCGTTCCCATGCTCCGTGTCTTTAATAACACTGCTCGGTACG 610726 Query 111970 TAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | |||| | ||| ||||| | || || | || ||||||| ||||| |||| Sbjct 610725 TCGACCAGGGTGGCAACAAGCGTCCC---GGTGCTTTTGCCATCTATCTCGAGCCTTGGC 610669 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 |||| ||| || | || || | || |||| ||||| || | || |||| || Sbjct 610668 ACGCCGATGTCTTCGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGAAGAGGTCCGCG 610609 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 ||| || || ||| ||||| ||||| || |||||||||||||||||||| || ||| Sbjct 610608 CCCGTGACCTTTTCCTTGCTCTTTGGATCCCTGATCTCTTCATGAAGAGAGTAGAAAAGA 610549 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 || | ||| |||| | || || | || || ||||| |||| | |||| Sbjct 610548 ACGGAGACTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTTGCCGACTGCTACGGTG 610489 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGA------GGAAGAAAGTCGGGCGACTGCGA 112257 ||||||| || ||| | ||| |||||||| || | |||| |||| | Sbjct 610488 AGGAGTTCGAGGCCTTATACGAGAAGTACGAACAGATGGGCAAGGGTCGCAAGACTCTTA 610429 Query 112258 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 || ||| || | ||| | || || ||| || ||||||||||||| || | | Sbjct 610428 AGG-CCCAAAAGC-----TCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAACC 610375 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | ||||| ||||| || || |||| || || || || ||||| ||||| | Sbjct 610374 CCTTCATGCTCTACAAGGATGCTGCCAACCGCAAAAGCAACCAGAAGAACCTGGGTACCA 610315 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 || || ||||||||||| || || ||| | || | | | || ||| |||| Sbjct 610314 TCCGTAGCTCCAACCTCTGCACTGAGATCATTGAGTACTCCGCGCCTGACGAGGTCGCTG 610255 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTT 112496 |||||||||| || || | || | |||| | || || | || || | | | Sbjct 610254 TGTGTAACCTGGCCTCGCTTGCCTTGCCCACATTCGTTGACTACAACGAGGGTGTC-TAC 610196 Query 112497 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATT 112556 || | | || |||||||| || || | |||| ||||| |||||| | ||| Sbjct 610195 GACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTCGTTCGCAACCTCAACAGAATCATT 610136 Query 112557 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616 ||| || ||||| || || || || || || ||| | ||||| || ||| Sbjct 610135 GATGTCAACCACTACCCGGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGCCCCATT 610076 Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG-CATTTGATTC 112675 ||||||||||| || ||||| ||||||| ||| || | || || | | || || || Sbjct 610075 GGTCTCGGTGTGCAGGGTCTTGCGGATGCCTTC-TTGGCTCTCCGCATGCCCTTCGAGTC 610017 Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735 ||||| || |||| | ||||| |||||||| || || || || ||| Sbjct 610016 TCCTGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACAATCTACCATGCTGCCCTT-- 609959 Query 112736 GGCGAGTTCGG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 112792 | | |||| ||||||| ||| || ||||| || | || | |||||||| || Sbjct 609958 -ACTATGTCGGTGCAGTTGGCTAAGGAGGAGGGTCCCTACCAGACGTACGAGGGTTCCCC 609900 Query 112793 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGA 112852 | ||| || || | || || | || |||||| | | | || || | || || || Sbjct 609899 TGTTTCTCAGGGCATTCTCCAGTACGACATGTGGAATGTTAAGCCCTCGGATCTCTGGGA 609840 Query 112853 CTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 112912 |||||||||||| ||||| | |||||| || | ||| | || ||| ||| | | || Sbjct 609839 CTGGGACGCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTCGC 609780 Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972 || ||||| || ||| |||| | || |||||||| || ||||| ||||| || ||||| Sbjct 609779 GCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGCCCTA 609720 Query 112973 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCA 113032 ||| | ||||| || | | | ||| || || |||||| | |||||| || Sbjct 609719 CACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTTCAAGTCGTCAAC--CCA 609662 Query 113033 T--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081 | ||| || | |||||| || || ||||| |||||| | | ||||||| Sbjct 609661 TGGCTCTTGAAGGACCTCGTCGACATGGGTCTGTGGTCCGATGCTATGAAG 609611 >seq6 Length=1110370 Score = 138 bits (152), Expect = 1e-27 Identities = 161/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAG 102164 |||||||| || |||| ||||| || || ||||| | |||||| || ||| ||| Sbjct 71023 ACAGTTCCTTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAG 71082 Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 || ||||| ||| |||| | | || || || ||| |||||||| |||||| | Sbjct 71083 TCC---TCCTTCGCTCAGCGTTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGT 71139 Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 ||| ||||| | | || | |||||||||||||| || |||||||| ||||| ||| Sbjct 71140 GGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTC 71199 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||||||||| ||||||||||||||||| || ||| Sbjct 71200 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCAC 71235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620738147914560