Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq11 260 2e-64 seq4 93.3 5e-14 >seq11 Length=827760 Score = 260 bits (288), Expect = 2e-64 Identities = 1027/1596 (64%), Gaps = 61/1596 (4%) Strand=Plus/Plus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGATACACTTT 109563 ||||| ||||| |||||||| |||||| || || ||||| | | | | ||| || Sbjct 609459 GACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGTACAACGGTACGCT-- 609516 Query 109564 TGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATG 109623 || |||||||| |||||||||||||| ||| | || ||||||| |||| Sbjct 609517 -GGGAGATTTCCCAAACAGTCTTGTACAATGCCTTCACCTCGGTAGGAATGTTGGGGATG 609575 Query 109624 TTTTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGA 109680 || || ||||| ||| || | |||| | | |||||| | | ||||| ||| Sbjct 609576 TTCTGGATAGA---ACCGTTCTCGGCAATGATACGGTTCTTCATAGCATCGGACCACAGA 609632 Query 109681 CCGACCTTTTTGAGATCGTCAACAAGATGCTT--GTTGACCACGACAAATTCACCAGCAA 109738 || | | ||| || | ||||| | | |||||| || ||| || ||||||| Sbjct 609633 CCCATGTCGACGAGGTC--CTTCAAGAGCCATGGGTTGACGACTTGAAACTCGCCAGCAA 609690 Query 109739 GTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGA 109798 | || || |||| ||||| | |||||||| ||||| |||||||||||||| | || Sbjct 609691 GGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGA 609750 Query 109799 TTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCG 109858 | || | ||| || || |||||||| || | ||| ||| ||| |||| ||| | | Sbjct 609751 TCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCT 609810 Query 109859 TCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCAT 109918 ||| | | |||| || |||||||| || | || | | | | || | ||| Sbjct 609811 GCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAGAGATC-CGA-----GGGCTTAACAT 609864 Query 109919 CCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACG 109978 |||||| || || || | |||| || | |||| ||||||| | | ||| ||| | Sbjct 609865 TCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGG 609924 Query 109979 ACCCCTCAACCTCGGCCAACT---CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCT 110035 ||||| ||| ||||||| | || || || || ||||| || || |||| Sbjct 609925 GACCCTCCTCCTTAGCCAACTGCACCGACATAG---TAAGGGCAGCATGGTAGATTGTCT 609981 Query 110036 CAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAA----GACCA 110088 | || || | || ||||| |||| || | | |||||||| | || Sbjct 609982 CGAATATCT---TCTTGTTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGAG 610038 Query 110089 CAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATG 110148 | ||| || ||||||| |||||||| |||||||||||||||||||| || |||| Sbjct 610039 CCAAG----AAGGCATCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATG 610094 Query 110149 TTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTC 110208 || | || || | || ||||| |||| || |||| | ||||| || Sbjct 610095 TTGCTGTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTTG 610154 Query 110209 TTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA 110268 ||| || |||| || ||||| || | | | ||| | | | ||| || Sbjct 610155 CGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA-GACACC--CTCGTTG 610211 Query 110269 TTG---ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTG 110325 | | || || |||| | |||| || || || || ||||||| |||||| Sbjct 610212 TAGTCAACGAATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGC 610271 Query 110326 TCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTC 110385 ||| ||| || | || || || || | |||||| || ||| ||||| ||||||| Sbjct 610272 GCGGAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTC 610331 Query 110386 TGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTC 110445 || || |||| |||| |||||||| ||||||||| | ||| | || || || || Sbjct 610332 TGGTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTT 610391 Query 110446 TGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAG--TTGCGTTAGCGAGAC 110503 || | || ||| ||||| | ||| | | ||| | || ||||| | | | Sbjct 610392 TGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTAAGAGTCTTGCG--ACCCTTGC 610449 Query 110504 CTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGAC 110563 | || |||||||| ||| ||| |||| || |||| ||||| || | ||||| Sbjct 610450 CCATCTGTTCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGAC 610509 Query 110564 CCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGA 110623 | || | ||| || | || | ||| | ||| || || || |||||||||| Sbjct 610510 CAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGA 610569 Query 110624 ACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTT 110683 | || ||||| ||||| | || ||||||||||||| || ||||||| | || | Sbjct 610570 AGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCAT 610629 Query 110684 GGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAG 110743 |||| || || || |||||||| | || ||| | |||||| || |||||||||| | Sbjct 610630 GGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGG 610689 Query 110744 CGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGA 110800 | | | || ||| || |||||| || || || || ||| ||| |||| Sbjct 610690 CAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGA 610749 Query 110801 CCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTAT 110860 | | |||||| |||| || || | ||| ||||| || || ||| || Sbjct 610750 CACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGG 610809 Query 110861 TGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC 110920 | || || ||| ||||| | | |||||| ||||| ||| ||| || ||| | Sbjct 610810 TAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGC 610869 Query 110921 A-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAG 110979 | ||| |||| || | |||||||| || || || || | || || | | || ||| Sbjct 610870 AGGTCT-TGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAG 610928 Query 110980 CAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATG 111039 |||||||||| ||| | | || || || || |||||||||||||| | || ||| || Sbjct 610929 CAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTG 610988 Query 111040 AACAGACCTTG--GGACATCTTGTTGTATGTGTCGA 111073 | ||| |||| |||||| |||||| || |||| Sbjct 610989 A--AGAACTTGCTCGACATCAGGTTGTAGGTCTCGA 611022 >seq4 Length=1514310 Score = 93.3 bits (102), Expect = 5e-14 Identities = 274/416 (66%), Gaps = 11/416 (3%) Strand=Plus/Minus Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG 11647 ||| ||| |||||||| || ||||||| |||||| | || || ||||| |||||| Sbjct 657691 TGTTGAAGCCGTCCATCTCGGTGAGAATCTGGTTCAGGGTGGCCTCGCGCTCGTCGTTGC 657632 Query 11648 AGGGCATACCA---CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATA 11704 | ||||| | || || | | | |||| ||||| ||||| || ||||| | Sbjct 657631 CGCCCATACGATTGCCCTCCTGTCTCGACCGGCCGATGGCGTCGATCTCGTCAATGAAGA 657572 Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764 || || || ||| || ||| |||| || || || || | | || | Sbjct 657571 TAATGCAGGGGGCGTTCTTCCGCGCCGTCGCGAACAGATCGCGGACTCTGGAGGGACCGA 657512 Query 11765 CACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGA 11822 | || ||||||||||| ||||| | | | || | | ||||| |||||| || ||| Sbjct 657511 CGCCGACGAACATCTCGACGAACTCGGAACCGCTCA-CGCTGAA-GAAGGGCACGCCAGA 657454 Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 ||| ||||| | || ||||| || |||||||| || || || | || || || | Sbjct 657453 CTCGCCAGCCGTCGCCTTGGCGAGCAGCGTCTTACCAGTTCCGGGAGGGCCGGCCAGGAT 657394 Query 11883 GGCGCCACGGGGGATCTTGGCACC--ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAG 11940 || || ||||| |||||||| || || || | ||||||| || ||||||||||| Sbjct 657393 AGCACCGCGGGGAATCTTGGCGCCTAACCTCTCGA--AGCGCTCTGGGGTCTTGAGGAAG 657336 Query 11941 TCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGGTGAA 11996 |||| |||| || ||| |||||| ||| || || | || ||| |||| Sbjct 657335 CTGACAAACTCCATAATCTCCGTCTTGGCCTCGTCCATGCCGGCGACGTCGCTGAA 657280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588971965514400