Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq11 260 2e-64
seq4 93.3 5e-14
>seq11
Length=827760
Score = 260 bits (288), Expect = 2e-64
Identities = 1027/1596 (64%), Gaps = 61/1596 (4%)
Strand=Plus/Plus
Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGATACACTTT 109563
||||| ||||| |||||||| |||||| || || ||||| | | | | ||| ||
Sbjct 609459 GACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGTACAACGGTACGCT-- 609516
Query 109564 TGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATG 109623
|| |||||||| |||||||||||||| ||| | || ||||||| ||||
Sbjct 609517 -GGGAGATTTCCCAAACAGTCTTGTACAATGCCTTCACCTCGGTAGGAATGTTGGGGATG 609575
Query 109624 TTTTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGA 109680
|| || ||||| ||| || | |||| | | |||||| | | ||||| |||
Sbjct 609576 TTCTGGATAGA---ACCGTTCTCGGCAATGATACGGTTCTTCATAGCATCGGACCACAGA 609632
Query 109681 CCGACCTTTTTGAGATCGTCAACAAGATGCTT--GTTGACCACGACAAATTCACCAGCAA 109738
|| | | ||| || | ||||| | | |||||| || ||| || |||||||
Sbjct 609633 CCCATGTCGACGAGGTC--CTTCAAGAGCCATGGGTTGACGACTTGAAACTCGCCAGCAA 609690
Query 109739 GTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGA 109798
| || || |||| ||||| | |||||||| ||||| |||||||||||||| | ||
Sbjct 609691 GGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGA 609750
Query 109799 TTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCG 109858
| || | ||| || || |||||||| || | ||| ||| ||| |||| ||| | |
Sbjct 609751 TCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCT 609810
Query 109859 TCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCAT 109918
||| | | |||| || |||||||| || | || | | | | || | |||
Sbjct 609811 GCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAGAGATC-CGA-----GGGCTTAACAT 609864
Query 109919 CCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACG 109978
|||||| || || || | |||| || | |||| ||||||| | | ||| ||| |
Sbjct 609865 TCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGG 609924
Query 109979 ACCCCTCAACCTCGGCCAACT---CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCT 110035
||||| ||| ||||||| | || || || || ||||| || || ||||
Sbjct 609925 GACCCTCCTCCTTAGCCAACTGCACCGACATAG---TAAGGGCAGCATGGTAGATTGTCT 609981
Query 110036 CAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAA----GACCA 110088
| || || | || ||||| |||| || | | |||||||| | ||
Sbjct 609982 CGAATATCT---TCTTGTTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGAG 610038
Query 110089 CAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATG 110148
| ||| || ||||||| |||||||| |||||||||||||||||||| || ||||
Sbjct 610039 CCAAG----AAGGCATCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATG 610094
Query 110149 TTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTC 110208
|| | || || | || ||||| |||| || |||| | ||||| ||
Sbjct 610095 TTGCTGTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTTG 610154
Query 110209 TTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA 110268
||| || |||| || ||||| || | | | ||| | | | ||| ||
Sbjct 610155 CGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA-GACACC--CTCGTTG 610211
Query 110269 TTG---ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTG 110325
| | || || |||| | |||| || || || || ||||||| ||||||
Sbjct 610212 TAGTCAACGAATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGC 610271
Query 110326 TCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTC 110385
||| ||| || | || || || || | |||||| || ||| ||||| |||||||
Sbjct 610272 GCGGAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTC 610331
Query 110386 TGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTC 110445
|| || |||| |||| |||||||| ||||||||| | ||| | || || || ||
Sbjct 610332 TGGTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTT 610391
Query 110446 TGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAG--TTGCGTTAGCGAGAC 110503
|| | || ||| ||||| | ||| | | ||| | || ||||| | | |
Sbjct 610392 TGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTAAGAGTCTTGCG--ACCCTTGC 610449
Query 110504 CTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGAC 110563
| || |||||||| ||| ||| |||| || |||| ||||| || | |||||
Sbjct 610450 CCATCTGTTCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGAC 610509
Query 110564 CCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGA 110623
| || | ||| || | || | ||| | ||| || || || ||||||||||
Sbjct 610510 CAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGA 610569
Query 110624 ACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTT 110683
| || ||||| ||||| | || ||||||||||||| || ||||||| | || |
Sbjct 610570 AGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCAT 610629
Query 110684 GGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAG 110743
|||| || || || |||||||| | || ||| | |||||| || |||||||||| |
Sbjct 610630 GGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGG 610689
Query 110744 CGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGA 110800
| | | || ||| || |||||| || || || || ||| ||| ||||
Sbjct 610690 CAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGA 610749
Query 110801 CCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTAT 110860
| | |||||| |||| || || | ||| ||||| || || ||| ||
Sbjct 610750 CACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGG 610809
Query 110861 TGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC 110920
| || || ||| ||||| | | |||||| ||||| ||| ||| || ||| |
Sbjct 610810 TAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGC 610869
Query 110921 A-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAG 110979
| ||| |||| || | |||||||| || || || || | || || | | || |||
Sbjct 610870 AGGTCT-TGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAG 610928
Query 110980 CAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATG 111039
|||||||||| ||| | | || || || || |||||||||||||| | || ||| ||
Sbjct 610929 CAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTG 610988
Query 111040 AACAGACCTTG--GGACATCTTGTTGTATGTGTCGA 111073
| ||| |||| |||||| |||||| || ||||
Sbjct 610989 A--AGAACTTGCTCGACATCAGGTTGTAGGTCTCGA 611022
>seq4
Length=1514310
Score = 93.3 bits (102), Expect = 5e-14
Identities = 274/416 (66%), Gaps = 11/416 (3%)
Strand=Plus/Minus
Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG 11647
||| ||| |||||||| || ||||||| |||||| | || || ||||| ||||||
Sbjct 657691 TGTTGAAGCCGTCCATCTCGGTGAGAATCTGGTTCAGGGTGGCCTCGCGCTCGTCGTTGC 657632
Query 11648 AGGGCATACCA---CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATA 11704
| ||||| | || || | | | |||| ||||| ||||| || ||||| |
Sbjct 657631 CGCCCATACGATTGCCCTCCTGTCTCGACCGGCCGATGGCGTCGATCTCGTCAATGAAGA 657572
Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764
|| || || ||| || ||| |||| || || || || | | || |
Sbjct 657571 TAATGCAGGGGGCGTTCTTCCGCGCCGTCGCGAACAGATCGCGGACTCTGGAGGGACCGA 657512
Query 11765 CACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGA 11822
| || ||||||||||| ||||| | | | || | | ||||| |||||| || |||
Sbjct 657511 CGCCGACGAACATCTCGACGAACTCGGAACCGCTCA-CGCTGAA-GAAGGGCACGCCAGA 657454
Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882
||| ||||| | || ||||| || |||||||| || || || | || || || |
Sbjct 657453 CTCGCCAGCCGTCGCCTTGGCGAGCAGCGTCTTACCAGTTCCGGGAGGGCCGGCCAGGAT 657394
Query 11883 GGCGCCACGGGGGATCTTGGCACC--ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAG 11940
|| || ||||| |||||||| || || || | ||||||| || |||||||||||
Sbjct 657393 AGCACCGCGGGGAATCTTGGCGCCTAACCTCTCGA--AGCGCTCTGGGGTCTTGAGGAAG 657336
Query 11941 TCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGGTGAA 11996
|||| |||| || ||| |||||| ||| || || | || ||| ||||
Sbjct 657335 CTGACAAACTCCATAATCTCCGTCTTGGCCTCGTCCATGCCGGCGACGTCGCTGAA 657280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588971965514400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |