Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq10 152 1e-31
seq54 134 3e-26
seq14 107 4e-18
seq11 84.2 5e-11
>seq10
Length=843860
Score = 152 bits (168), Expect = 1e-31
Identities = 159/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||||||||| ||||| || ||||| ||||| || | | ||| | ||||||||
Sbjct 384192 ACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCC 384133
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || ||||| || | || || ||||| ||||||||||| || ||||| |||
Sbjct 384132 AGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGA 384073
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| ||||| || || |||||||| ||| || || || || | ||||||
Sbjct 384072 ATCTTGGACTTCACGTTGTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTT 384013
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| || || ||||| | |||||
Sbjct 384012 CCAGTCAATGTCTTGACGAAGATCTGCAT 383984
Score = 113 bits (124), Expect = 1e-19
Identities = 133/180 (74%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||| |||||||| || ||||||||||| |||| || || | || || || |||||
Sbjct 383680 GTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACCGTCCTCAAGCTG 383621
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || ||||||||||| || || ||||| ||||| || || || ||||| ||||| ||
Sbjct 383620 CTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTT 383561
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| ||||| || || || || || || || || || || | ||||| || ||
Sbjct 383560 GGACTTCACGTTGTCGATAGTATCAGAGGACTCGACCTCCAGAGTGATGGTCTTGCCGGT 383501
>seq54
Length=312047
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||||||||| || || || ||||| |||| || || | || || |||
Sbjct 98792 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 98733
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || || ||||| || ||||| ||
Sbjct 98732 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 98673
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || |||||||| || ||||| |||||||| | |||||
Sbjct 98672 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTA 98613
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 98612 CCCGTGAGGGTCTTCACGAAGATCTGCAT 98584
>seq14
Length=768254
Score = 107 bits (118), Expect = 4e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| |||| || || | ||||| ||||||||||| || ||||||||
Sbjct 490602 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 490661
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| || || ||||| || || ||||| || ||||| || || || |||||| || ||
Sbjct 490662 AAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 490721
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
|| ||||| || || || |||||||||| ||||| || |||| || || |||||
Sbjct 490722 ATCGTGTCTGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 490780
>seq11
Length=827760
Score = 84.2 bits (92), Expect = 5e-11
Identities = 172/253 (68%), Gaps = 2/253 (1%)
Strand=Plus/Minus
Query 160610 GATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAA 160669
||||| |||||||||||||| || | || || || |||| ||| | || ||||||||
Sbjct 610576 GATCTCTTCATGAAGAGAGTAGAAAAGAACGGAGACTGGACTCTTATGTGCCCCAATGAG 610517
Query 160670 GCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAA 160729
||||| |||| || || ||| ||||||||| | | || || | ||||||
Sbjct 610516 TGCCCTGGTCTTGCCGACTGCTACGGTGAGGAGTTCGAGGCCTTATACGAGAAGTACGAA 610457
Query 160730 -AAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAACTGTGGCATCACATCCTTGT 160788
| | || ||| | | || || | ||||||||| | || ||| || |||||| |
Sbjct 610456 CAGATGGGCAAGGGTCGCAAGACTC-TTAAGGCCCAAAAGCTCTGGTATGCCATCCTCGA 610398
Query 160789 CGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATGCCATCTGTCGCAAGAG 160848
|| ||| |||| || | ||||| || ||||||||||| | ||||| ||
Sbjct 610397 GGCTCAAACCGAGACAGGCAACCCCTTCATGCTCTACAAGGATGCTGCCAACCGCAAAAG 610338
Query 160849 TAACCAGAAGAAC 160861
||||||||||||
Sbjct 610337 CAACCAGAAGAAC 610325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109473810052316
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |