Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq10 152 1e-31 seq54 134 3e-26 seq14 107 4e-18 seq11 84.2 5e-11 >seq10 Length=843860 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||||||||| ||||| || ||||| ||||| || | | ||| | |||||||| Sbjct 384192 ACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCC 384133 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || | || || ||||| ||||||||||| || ||||| ||| Sbjct 384132 AGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGA 384073 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || || |||||||| ||| || || || || | |||||| Sbjct 384072 ATCTTGGACTTCACGTTGTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTT 384013 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 384012 CCAGTCAATGTCTTGACGAAGATCTGCAT 383984 Score = 113 bits (124), Expect = 1e-19 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || ||||||||||| |||| || || | || || || ||||| Sbjct 383680 GTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACCGTCCTCAAGCTG 383621 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||||||||| || || ||||| ||||| || || || ||||| ||||| || Sbjct 383620 CTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTT 383561 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| || || || || || || || || || || | ||||| || || Sbjct 383560 GGACTTCACGTTGTCGATAGTATCAGAGGACTCGACCTCCAGAGTGATGGTCTTGCCGGT 383501 >seq54 Length=312047 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| |||| || || | || || ||| Sbjct 98792 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 98733 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 98732 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 98673 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| || ||||| |||||||| | ||||| Sbjct 98672 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTA 98613 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 98612 CCCGTGAGGGTCTTCACGAAGATCTGCAT 98584 >seq14 Length=768254 Score = 107 bits (118), Expect = 4e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || || | ||||| ||||||||||| || |||||||| Sbjct 490602 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 490661 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | || || ||||| || || ||||| || ||||| || || || |||||| || || Sbjct 490662 AAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 490721 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || ||||| || || || |||||||||| ||||| || |||| || || ||||| Sbjct 490722 ATCGTGTCTGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 490780 >seq11 Length=827760 Score = 84.2 bits (92), Expect = 5e-11 Identities = 172/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 160610 GATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAA 160669 ||||| |||||||||||||| || | || || || |||| ||| | || |||||||| Sbjct 610576 GATCTCTTCATGAAGAGAGTAGAAAAGAACGGAGACTGGACTCTTATGTGCCCCAATGAG 610517 Query 160670 GCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAA 160729 ||||| |||| || || ||| ||||||||| | | || || | |||||| Sbjct 610516 TGCCCTGGTCTTGCCGACTGCTACGGTGAGGAGTTCGAGGCCTTATACGAGAAGTACGAA 610457 Query 160730 -AAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAACTGTGGCATCACATCCTTGT 160788 | | || ||| | | || || | ||||||||| | || ||| || |||||| | Sbjct 610456 CAGATGGGCAAGGGTCGCAAGACTC-TTAAGGCCCAAAAGCTCTGGTATGCCATCCTCGA 610398 Query 160789 CGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATGCCATCTGTCGCAAGAG 160848 || ||| |||| || | ||||| || ||||||||||| | ||||| || Sbjct 610397 GGCTCAAACCGAGACAGGCAACCCCTTCATGCTCTACAAGGATGCTGCCAACCGCAAAAG 610338 Query 160849 TAACCAGAAGAAC 160861 |||||||||||| Sbjct 610337 CAACCAGAAGAAC 610325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109473810052316