Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq10 86.0 5e-11 >seq10 Length=843860 Score = 86.0 bits (94), Expect = 5e-11 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| || | |||||||| ||| ||||| || ||||| || | ||||| Sbjct 383974 GAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGG--ATGTTGTAGTCCGAGAGAGTG 383917 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||| ||||| || || || ||||| || | | ||||||||||||||| || ||| Sbjct 383916 CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGGATGCCT 383857 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAG 563432 || || || ||||| || || || || || ||||||| | || | | ||||| Sbjct 383856 TCCTTGTCCTGAATCTTAGACTTGACATTGTCGATGGTATCAGAG-GACTCAACCTCGAG 383798 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGA 563464 ||| | || || |||||||| || || |||| Sbjct 383797 AGTGATGGTCTTGCCAGTAAGGGTCTTGACGA 383766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029267019288520