Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq11 291 2e-73
seq6 147 4e-30
>seq11
Length=827760
Score = 291 bits (322), Expect = 2e-73
Identities = 1039/1602 (65%), Gaps = 84/1602 (5%)
Strand=Plus/Plus
Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612
|| || ||||| | || |||||||||||| ||||| || ||||||||||| |||||
Sbjct 609324 ACGGTGAACTGAATGGGCGCAGCAGCAGCCTGTGTGCGCAGGTAGTACATGCCCGTCTTC 609383
Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668
|| || ||| |||||| | |||||| |||| ||| |||| | ||| |
Sbjct 609384 AGACCGAGCTT---CCAGCCAGCGAAGTGCAT-GCTGGTGA---TCTTGCCC---ATAGT 609433
Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728
| |||| | | |||| | ||| |||||||| |||||| ||||| | |
Sbjct 609434 CGGGTCCTTCATGTGG---------ATGTTAAGGGACTGCGACTGGTCGATGAAGGCACC 609484
Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788
| ||| || ||||| | || | | |||||||| ||||| || |||||| | |
Sbjct 609485 ACGGTCGGCAGCCATCTGTACAACGGTACGCTGGGAGATTTCCCAAACAGTCTTGTACAA 609544
Query 212789 TTCTTTGAGGTCCTCTG--GGAA-GCCGGGGATGTTCTGCACAGACCCCCTGTGT---AT 212842
| | || | |||| | |||| | |||||||||||| | ||| || | | ||
Sbjct 609545 TGCCTTCA---CCTCGGTAGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCAAT 609601
Query 212843 GGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAG 212902
| | | | | ||| | ||| ||| || ||| || | ||| ||| | ||
Sbjct 609602 GATACGGTTCTT---CATAGCATCGGACCACAGACCCATGTCGACGAGGTCCTTCAAGAG 609658
Query 212903 GTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGT 212962
|||||||| | || || || || | || || | | ||||||| ||| || ||
Sbjct 609659 CCATGGGTTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGT 609718
Query 212963 GTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGG 213022
||||||||||| || ||| ||||| |||| ||||| | |||||||| || ||||||||
Sbjct 609719 GTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGG 609778
Query 213023 AGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCA 213082
|| || || ||| ||| | || ||||||| ||| | | || | ||||
Sbjct 609779 CGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCA 609838
Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142
|||||| || ||| | ||| || ||||||||||| |||| | |||||
Sbjct 609839 GTCCCAG---------AGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGAATGCC 609889
Query 213143 TTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA 213202
| || ||| |||| ||| | |||||| || | |||||| |||| || |||
Sbjct 609890 CTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACT-GCA 609948
Query 213203 G-GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGG 213261
||| |||||||| | |||||| || || ||||||| | ||||||| | |
Sbjct 609949 CCGACATAGTAAGGGCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAG 610008
Query 213262 CCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCC 213321
| || || ||| ||||||||| | ||| |||| || || ||||| || |
Sbjct 610009 CTTCAGGAGACTCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACAC 610068
Query 213322 CGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGT 213381
||| || ||||| | ||| | || ||| ||| | ||||| | ||||| ||
Sbjct 610069 CGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACCGGGTAGTGGT 610128
Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441
|| || ||||| ||||||||||||| | | || | |||||| | | || | ||
Sbjct 610129 TGACATCAATGATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCT 610188
Query 213442 CGTGATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGG 213495
| || ||||| | || || | || || |||| ||| | ||
Sbjct 610189 GG------AAGTCGTAGACACCCTCGTTGTAGTCAACGAATGTGGGCAAGGCAAGCGAGG 610242
Query 213496 CCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555
||||||| || || || ||||| | || | | |||||| |||||||| ||||| ||||
Sbjct 610243 CCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAGAGGT 610302
Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG-TTGGCAGAATCCTTG 213614
|| || |||||||| |||||||||| ||||| | |||||| ||||||| |||||||
Sbjct 610303 TGGAGCTACGGATGGTACCCAGGTTCTTCTGGTT-GCTTTTGCGGTTGGCAGCATCCTTG 610361
Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGT 213672
||||||||| ||||| || ||||| || | | | || || ||| |||||| |
Sbjct 610362 TAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGAT--GGCATACCAGAGCT 610419
Query 213673 ACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCC--TCGTACTGTTCGTAGAG 213730
|||||| | | | ||| || || | | ||||||| ||||| |
Sbjct 610420 TTTGGGCCTTAAGAGTCTTGC-GAC----CCTTGCCCATCTGTTCGTACTTCTCGTATAA 610474
Query 213731 CTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAG 213790
| | ||| || | || || | | || || || || ||| ||||| ||
Sbjct 610475 GGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAG 610534
Query 213791 GCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGG 213849
||||||| |||| | | ||| ||||||| |||||| || || |||| ||| || ||
Sbjct 610535 AGTCCAGTCTCCGTTCTTTTCT-ACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAA 610593
Query 213850 TGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGT 213909
||| ||||| | || | ||| ||| ||| ||| || |||||||||| |||||
Sbjct 610594 GGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAGT 610653
Query 213910 CAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGC 213966
| |||| || |||||||| ||||| | ||||||||||| || || | || | ||||
Sbjct 610654 CGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGC 610713
Query 213967 CGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGT 214026
| |||||||| || || || | || |||| || || | ||| || | ||||
Sbjct 610714 CACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGT 610773
Query 214027 TGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA-- 214084
|||| || ||||| || || || || ||||||| || | || ||| ||||
Sbjct 610774 TGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGC---GGATGC-GGTGGACG 610829
Query 214085 --GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAG 214124
||| || |||||||| || |||||||||||| ||||||
Sbjct 610830 TTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAG 610871
>seq6
Length=1110370
Score = 147 bits (162), Expect = 4e-30
Identities = 340/505 (67%), Gaps = 13/505 (3%)
Strand=Plus/Minus
Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899
|||||||| | || | || ||||||||||| ||||| || ||| ||||| ||||||
Sbjct 71537 TGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATATTCTCC 71478
Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCAG 47958
|| ||| ||||||||||| | || || ||| |||| ||| | ||| ||
Sbjct 71477 ATAAAGTCGAAGGGGTTGGAAGACTTGTAAACCT-TGTCGTTGCCAAGAGCAACCAAGAG 71419
Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018
| | || |||||| |||| ||||| | ||| ||| || ||||||||| | ||||
Sbjct 71418 GCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGC 71359
Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078
|| | |||| || || ||||||| ||| |||| ||||| || | | || |
Sbjct 71358 GCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCATCGACAATGATGTC 71299
Query 48079 CT---TAACGCGGGACTCTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134
|| |||| | | ||| || | || ||| ||||| || || || | |||||
Sbjct 71298 CTCGATAAC-CTGCTTGCTGGGGCGGTTCTTG---AGGTG---GGAGTACAGGAGGCAGG 71246
Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194
| ||||| |||||| || ||||| || ||||||| |||||||||| ||||| |
Sbjct 71245 CGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGACCGG 71186
Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254
|||||| || | || ||||||||||| || | ||||| | ||| |||||| || |
Sbjct 71185 GCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAAATAC 71126
Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314
|||| || || ||||| || | | || |||| || | |||| || ||||
Sbjct 71125 CCTCGACAGCAGCGAAGGCAACCAAACGCTGAGCGAAGGAGGACTTCTCATCGCTAATCC 71066
Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTT 48339
| || |||||||| ||||||||
Sbjct 71065 ACTTGAGGGCCCAGTCGGCCTTCTT 71041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931526419000320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |