Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq11 291 2e-73 seq6 147 4e-30 >seq11 Length=827760 Score = 291 bits (322), Expect = 2e-73 Identities = 1039/1602 (65%), Gaps = 84/1602 (5%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||||||||||| ||||| || ||||||||||| ||||| Sbjct 609324 ACGGTGAACTGAATGGGCGCAGCAGCAGCCTGTGTGCGCAGGTAGTACATGCCCGTCTTC 609383 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668 || || ||| |||||| | |||||| |||| ||| |||| | ||| | Sbjct 609384 AGACCGAGCTT---CCAGCCAGCGAAGTGCAT-GCTGGTGA---TCTTGCCC---ATAGT 609433 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 | |||| | | |||| | ||| |||||||| |||||| ||||| | | Sbjct 609434 CGGGTCCTTCATGTGG---------ATGTTAAGGGACTGCGACTGGTCGATGAAGGCACC 609484 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||| || ||||| | || | | |||||||| ||||| || |||||| | | Sbjct 609485 ACGGTCGGCAGCCATCTGTACAACGGTACGCTGGGAGATTTCCCAAACAGTCTTGTACAA 609544 Query 212789 TTCTTTGAGGTCCTCTG--GGAA-GCCGGGGATGTTCTGCACAGACCCCCTGTGT---AT 212842 | | || | |||| | |||| | |||||||||||| | ||| || | | || Sbjct 609545 TGCCTTCA---CCTCGGTAGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCAAT 609601 Query 212843 GGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAG 212902 | | | | | ||| | ||| ||| || ||| || | ||| ||| | || Sbjct 609602 GATACGGTTCTT---CATAGCATCGGACCACAGACCCATGTCGACGAGGTCCTTCAAGAG 609658 Query 212903 GTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGT 212962 |||||||| | || || || || | || || | | ||||||| ||| || || Sbjct 609659 CCATGGGTTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGT 609718 Query 212963 GTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGG 213022 ||||||||||| || ||| ||||| |||| ||||| | |||||||| || |||||||| Sbjct 609719 GTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGG 609778 Query 213023 AGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCA 213082 || || || ||| ||| | || ||||||| ||| | | || | |||| Sbjct 609779 CGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCA 609838 Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142 |||||| || ||| | ||| || ||||||||||| |||| | ||||| Sbjct 609839 GTCCCAG---------AGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGAATGCC 609889 Query 213143 TTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA 213202 | || ||| |||| ||| | |||||| || | |||||| |||| || ||| Sbjct 609890 CTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACT-GCA 609948 Query 213203 G-GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGG 213261 ||| |||||||| | |||||| || || ||||||| | ||||||| | | Sbjct 609949 CCGACATAGTAAGGGCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAG 610008 Query 213262 CCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCC 213321 | || || ||| ||||||||| | ||| |||| || || ||||| || | Sbjct 610009 CTTCAGGAGACTCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACAC 610068 Query 213322 CGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGT 213381 ||| || ||||| | ||| | || ||| ||| | ||||| | ||||| || Sbjct 610069 CGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACCGGGTAGTGGT 610128 Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441 || || ||||| ||||||||||||| | | || | |||||| | | || | || Sbjct 610129 TGACATCAATGATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCT 610188 Query 213442 CGTGATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGG 213495 | || ||||| | || || | || || |||| ||| | || Sbjct 610189 GG------AAGTCGTAGACACCCTCGTTGTAGTCAACGAATGTGGGCAAGGCAAGCGAGG 610242 Query 213496 CCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555 ||||||| || || || ||||| | || | | |||||| |||||||| ||||| |||| Sbjct 610243 CCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAGAGGT 610302 Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG-TTGGCAGAATCCTTG 213614 || || |||||||| |||||||||| ||||| | |||||| ||||||| ||||||| Sbjct 610303 TGGAGCTACGGATGGTACCCAGGTTCTTCTGGTT-GCTTTTGCGGTTGGCAGCATCCTTG 610361 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGT 213672 ||||||||| ||||| || ||||| || | | | || || ||| |||||| | Sbjct 610362 TAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGAT--GGCATACCAGAGCT 610419 Query 213673 ACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCC--TCGTACTGTTCGTAGAG 213730 |||||| | | | ||| || || | | ||||||| ||||| | Sbjct 610420 TTTGGGCCTTAAGAGTCTTGC-GAC----CCTTGCCCATCTGTTCGTACTTCTCGTATAA 610474 Query 213731 CTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAG 213790 | | ||| || | || || | | || || || || ||| ||||| || Sbjct 610475 GGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAG 610534 Query 213791 GCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGG 213849 ||||||| |||| | | ||| ||||||| |||||| || || |||| ||| || || Sbjct 610535 AGTCCAGTCTCCGTTCTTTTCT-ACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAA 610593 Query 213850 TGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGT 213909 ||| ||||| | || | ||| ||| ||| ||| || |||||||||| ||||| Sbjct 610594 GGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAGT 610653 Query 213910 CAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGC 213966 | |||| || |||||||| ||||| | ||||||||||| || || | || | |||| Sbjct 610654 CGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGC 610713 Query 213967 CGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGT 214026 | |||||||| || || || | || |||| || || | ||| || | |||| Sbjct 610714 CACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGT 610773 Query 214027 TGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA-- 214084 |||| || ||||| || || || || ||||||| || | || ||| |||| Sbjct 610774 TGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGC---GGATGC-GGTGGACG 610829 Query 214085 --GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAG 214124 ||| || |||||||| || |||||||||||| |||||| Sbjct 610830 TTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAG 610871 >seq6 Length=1110370 Score = 147 bits (162), Expect = 4e-30 Identities = 340/505 (67%), Gaps = 13/505 (3%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 |||||||| | || | || ||||||||||| ||||| || ||| ||||| |||||| Sbjct 71537 TGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATATTCTCC 71478 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCAG 47958 || ||| ||||||||||| | || || ||| |||| ||| | ||| || Sbjct 71477 ATAAAGTCGAAGGGGTTGGAAGACTTGTAAACCT-TGTCGTTGCCAAGAGCAACCAAGAG 71419 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | | || |||||| |||| ||||| | ||| ||| || ||||||||| | |||| Sbjct 71418 GCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGC 71359 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 || | |||| || || ||||||| ||| |||| ||||| || | | || | Sbjct 71358 GCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCATCGACAATGATGTC 71299 Query 48079 CT---TAACGCGGGACTCTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 || |||| | | ||| || | || ||| ||||| || || || | ||||| Sbjct 71298 CTCGATAAC-CTGCTTGCTGGGGCGGTTCTTG---AGGTG---GGAGTACAGGAGGCAGG 71246 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| |||||| || ||||| || ||||||| |||||||||| ||||| | Sbjct 71245 CGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGACCGG 71186 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||||| || | || ||||||||||| || | ||||| | ||| |||||| || | Sbjct 71185 GCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAAATAC 71126 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || || ||||| || | | || |||| || | |||| || |||| Sbjct 71125 CCTCGACAGCAGCGAAGGCAACCAAACGCTGAGCGAAGGAGGACTTCTCATCGCTAATCC 71066 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTT 48339 | || |||||||| |||||||| Sbjct 71065 ACTTGAGGGCCCAGTCGGCCTTCTT 71041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931526419000320