Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq11 334 1e-86
seq6 138 2e-27
>seq11
Length=827760
Score = 334 bits (370), Expect = 1e-86
Identities = 854/1280 (67%), Gaps = 51/1280 (4%)
Strand=Plus/Plus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475
|| |||||||| |||||||| ||||| || ||| |||||||||| || | || || ||
Sbjct 609957 GTAAGGGCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGG-TCACGAGCTTCAGG 610015
Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535
||| ||||||||| || || | ||| | || || || ||||| || |||| |||
Sbjct 610016 AGACTCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACACCGAGACC 610075
Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593
||||| | ||| | | ||||| | |||| | || |||| |||| || ||||||
Sbjct 610076 AATGGGGCGGTGGCGCATGTTGCTGTTGCGGGC-CTCCTGGACCGGG-TAGTGGTTGACA 610133
Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653
|| || | |||||||||| || || || | |||||| |||||||||
Sbjct 610134 TCAATGATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAG 610193
Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713
| | | || |||| || || || || || | | | ||||| |
Sbjct 610194 TCGTAGACACCCTCGT--------TGTAG----TCAACGAATGTGGGCAAGGCAAGCGAG 610241
Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773
|||||||||||||| || |||||||| || |||| |||||||| || ||||||
Sbjct 610242 GCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAGAGG 610301
Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833
||| || |||||| ||||||| || || || ||||| |||||||| ||||||
Sbjct 610302 TTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCCTTG 610361
Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893
|||||||| ||||| ||| ||||| |||||| | || || | |||||| | |
Sbjct 610362 TAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTT 610421
Query 221894 CTGGCGCTCACCGTCCTCTTGACTGCACCCTCGG---TCTTTTCATAC--CCGGTATAGA 221948
||| | | ||| ||| ||||| | ||| ||| ||| | |||||
Sbjct 610422 TGGGCCTTAAGAGTC---TTGCG---ACCCTTGCCCATCTGTTCGTACTTCTCGTATAAG 610475
Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008
|| | | |||| |||||||| ||| | || || || ||| ||| ||||| |
Sbjct 610476 GCCT--CGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAA 610533
Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068
|| |||||| ||| | || || |||| ||||||||| || |||||||| || ||
Sbjct 610534 GAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAA 610593
Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128
| || || || | || || ||| ||| ||| | ||| |||| |||||| ||||| |
Sbjct 610594 GGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAGT 610653
Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188
| || | || |||||||| ||||| ||||||| ||| | ||| ||||| ||||||||||
Sbjct 610654 CGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGC 610713
Query 222189 CACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247
||||||| || | | | | ||| | || |||| || || | || || | |||
Sbjct 610714 CACCCTGGTCGA-CGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCG 610772
Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC 222307
||||| || |||||||| |||||| | ||| || | || | | || |||
Sbjct 610773 TTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGC---GGATGC-GGTGGAC 610828
Query 222308 ----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363
| || || ||||| || || |||||||| |||||| ||||||| |||||
Sbjct 610829 GTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTA 610888
Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTT 222423
|| ||||| ||||||||||| || | || | || || ||||| |||| ||| | ||
Sbjct 610889 AATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTG 610948
Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483
|| || || ||||| || || || ||| |||||| || ||| | || ||||||||
Sbjct 610949 GGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAG 611008
Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGC--ATGGCGCATCT 222540
| ||| ||||| | ||| | | | |||||| ||| || ||| | ||| |
Sbjct 611009 GTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCAGA---TGCCAACAGCGACACG 611065
Query 222541 CATGTACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGAT 222598
|||| ||||| |||||| ||||| || || | |||| || |||||||||
Sbjct 611066 CATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCT--TCAGGAGGTACGAT 611123
Query 222599 TTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCG 222658
| |||| |||||||| || ||||| | | || ||||| | | ||| || | |||
Sbjct 611124 CTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCA 611183
Query 222659 GCGTCCAGCTCCGACTTGTG 222678
| ||| |||||| ||||||
Sbjct 611184 GAGTCAAGCTCCTCCTTGTG 611203
>seq6
Length=1110370
Score = 138 bits (152), Expect = 2e-27
Identities = 299/451 (66%), Gaps = 13/451 (3%)
Strand=Plus/Plus
Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936
|||| |||| ||||| |||||||| ||||| || || ||||| ||| | || || |||
Sbjct 71096 AGCGTTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCA 71155
Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996
|||||||||||||| || || ||||||||| ||| || |||||||||||||||
Sbjct 71156 TCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTCTCCAACGAGCTCATCT 71215
Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056
| ||||||||||| |||| || || |||||||| || ||| | |||| |||
Sbjct 71216 CTCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTCCTGTACTC---CCAC---CTCA 71269
Query 26057 ACAA--ACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113
| || || |||| || || | ||||| || || || |||| |||
Sbjct 71270 AGAACCGCCCCAGCAAGCAGGTTATCGAGGACATCATTGTCGATGCCGTCAAGATTGAGC 71329
Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGA 26173
||||||| | | ||||||||| || || ||||
Sbjct 71330 AGGAGTTCCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAACTCCAACCTGATGA 71389
Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGACT 26231
|| |||||||||| || ||||||| || || ||| || || || || |
Sbjct 71390 AGCAGTACATTGAGTTCGTCGCCGACCGCCTCTTGGTTGC--TCTTGGCAACGACAAGGT 71447
Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291
|||| | | ||||| |||||||||||||| || || || ||| || ||||||||
Sbjct 71448 TTACAAGTCTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAA 71507
Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322
||||||||||||| | || | |||||| |||
Sbjct 71508 CTTCTTTGAAAAGCGTGTTGCCGACTACCAA 71538
Score = 89.7 bits (98), Expect = 1e-12
Identities = 163/234 (70%), Gaps = 5/234 (2%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| |||||||||||||||| | || ||||||||| || ||||||||||||
Sbjct 70634 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATCTG 70693
Query 25537 GCCAAGGACATGGACGGCTGGTAC-GCTCTATCCA--AAGACGAGCAGCATTTTCTCAAG 25593
| |||||| || ||| |||| || | ||| | | || ||| || | || || |
Sbjct 70694 TCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAGGATGAGAAGTACTTCATCTCG 70753
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|| | | || ||||| || || || || || || || || ||||| || |||| |
Sbjct 70754 CACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 70813
Query 25654 TTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
|||| | | || || | ||| | | |||||| || |||||||| ||||||||
Sbjct 70814 TTCAGCGGCGAGGTTCAAGTGCCT-GAGGCCCGCTGCTTCTACGGCTTCCAGAT 70866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928838437413120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |