Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq11 334 1e-86 seq6 138 2e-27 >seq11 Length=827760 Score = 334 bits (370), Expect = 1e-86 Identities = 854/1280 (67%), Gaps = 51/1280 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || |||||||| |||||||| ||||| || ||| |||||||||| || | || || || Sbjct 609957 GTAAGGGCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGG-TCACGAGCTTCAGG 610015 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||||||||| || || | ||| | || || || ||||| || |||| ||| Sbjct 610016 AGACTCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACACCGAGACC 610075 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 ||||| | ||| | | ||||| | |||| | || |||| |||| || |||||| Sbjct 610076 AATGGGGCGGTGGCGCATGTTGCTGTTGCGGGC-CTCCTGGACCGGG-TAGTGGTTGACA 610133 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 || || | |||||||||| || || || | |||||| ||||||||| Sbjct 610134 TCAATGATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAG 610193 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 | | | || |||| || || || || || | | | ||||| | Sbjct 610194 TCGTAGACACCCTCGT--------TGTAG----TCAACGAATGTGGGCAAGGCAAGCGAG 610241 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||||||||||||| || |||||||| || |||| |||||||| || |||||| Sbjct 610242 GCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAGAGG 610301 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||| || |||||| ||||||| || || || ||||| |||||||| |||||| Sbjct 610302 TTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCCTTG 610361 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 |||||||| ||||| ||| ||||| |||||| | || || | |||||| | | Sbjct 610362 TAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTT 610421 Query 221894 CTGGCGCTCACCGTCCTCTTGACTGCACCCTCGG---TCTTTTCATAC--CCGGTATAGA 221948 ||| | | ||| ||| ||||| | ||| ||| ||| | ||||| Sbjct 610422 TGGGCCTTAAGAGTC---TTGCG---ACCCTTGCCCATCTGTTCGTACTTCTCGTATAAG 610475 Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008 || | | |||| |||||||| ||| | || || || ||| ||| ||||| | Sbjct 610476 GCCT--CGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAA 610533 Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 || |||||| ||| | || || |||| ||||||||| || |||||||| || || Sbjct 610534 GAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAA 610593 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 | || || || | || || ||| ||| ||| | ||| |||| |||||| ||||| | Sbjct 610594 GGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAGT 610653 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 | || | || |||||||| ||||| ||||||| ||| | ||| ||||| |||||||||| Sbjct 610654 CGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGC 610713 Query 222189 CACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 ||||||| || | | | | ||| | || |||| || || | || || | ||| Sbjct 610714 CACCCTGGTCGA-CGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCG 610772 Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC 222307 ||||| || |||||||| |||||| | ||| || | || | | || ||| Sbjct 610773 TTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGC---GGATGC-GGTGGAC 610828 Query 222308 ----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363 | || || ||||| || || |||||||| |||||| ||||||| ||||| Sbjct 610829 GTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTA 610888 Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTT 222423 || ||||| ||||||||||| || | || | || || ||||| |||| ||| | || Sbjct 610889 AATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTG 610948 Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483 || || || ||||| || || || ||| |||||| || ||| | || |||||||| Sbjct 610949 GGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAG 611008 Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGC--ATGGCGCATCT 222540 | ||| ||||| | ||| | | | |||||| ||| || ||| | ||| | Sbjct 611009 GTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCAGA---TGCCAACAGCGACACG 611065 Query 222541 CATGTACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGAT 222598 |||| ||||| |||||| ||||| || || | |||| || ||||||||| Sbjct 611066 CATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCT--TCAGGAGGTACGAT 611123 Query 222599 TTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCG 222658 | |||| |||||||| || ||||| | | || ||||| | | ||| || | ||| Sbjct 611124 CTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCA 611183 Query 222659 GCGTCCAGCTCCGACTTGTG 222678 | ||| |||||| |||||| Sbjct 611184 GAGTCAAGCTCCTCCTTGTG 611203 >seq6 Length=1110370 Score = 138 bits (152), Expect = 2e-27 Identities = 299/451 (66%), Gaps = 13/451 (3%) Strand=Plus/Plus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| |||| ||||| |||||||| ||||| || || ||||| ||| | || || ||| Sbjct 71096 AGCGTTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCA 71155 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||||||||| || || ||||||||| ||| || ||||||||||||||| Sbjct 71156 TCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTCTCCAACGAGCTCATCT 71215 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056 | ||||||||||| |||| || || |||||||| || ||| | |||| ||| Sbjct 71216 CTCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTCCTGTACTC---CCAC---CTCA 71269 Query 26057 ACAA--ACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113 | || || |||| || || | ||||| || || || |||| ||| Sbjct 71270 AGAACCGCCCCAGCAAGCAGGTTATCGAGGACATCATTGTCGATGCCGTCAAGATTGAGC 71329 Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGA 26173 ||||||| | | ||||||||| || || |||| Sbjct 71330 AGGAGTTCCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAACTCCAACCTGATGA 71389 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGACT 26231 || |||||||||| || ||||||| || || ||| || || || || | Sbjct 71390 AGCAGTACATTGAGTTCGTCGCCGACCGCCTCTTGGTTGC--TCTTGGCAACGACAAGGT 71447 Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 |||| | | ||||| |||||||||||||| || || || ||| || |||||||| Sbjct 71448 TTACAAGTCTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAA 71507 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||||||||||||| | || | |||||| ||| Sbjct 71508 CTTCTTTGAAAAGCGTGTTGCCGACTACCAA 71538 Score = 89.7 bits (98), Expect = 1e-12 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || ||||||||| || |||||||||||| Sbjct 70634 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATCTG 70693 Query 25537 GCCAAGGACATGGACGGCTGGTAC-GCTCTATCCA--AAGACGAGCAGCATTTTCTCAAG 25593 | |||||| || ||| |||| || | ||| | | || ||| || | || || | Sbjct 70694 TCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAGGATGAGAAGTACTTCATCTCG 70753 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || || || || || || || || ||||| || |||| | Sbjct 70754 CACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 70813 Query 25654 TTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | | || || | ||| | | |||||| || |||||||| |||||||| Sbjct 70814 TTCAGCGGCGAGGTTCAAGTGCCT-GAGGCCCGCTGCTTCTACGGCTTCCAGAT 70866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928838437413120