Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq11 179 1e-39 seq1 100 8e-16 >seq11 Length=827760 Score = 179 bits (198), Expect = 1e-39 Identities = 483/731 (66%), Gaps = 27/731 (4%) Strand=Plus/Plus Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 |||||| ||| ||||| || || |||||| || | ||||||||||| ||| | | Sbjct 610287 ATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTTTTGCGG 610346 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 || |||||||||||| || ||| | ||| | |||||||| | || || || || || Sbjct 610347 TTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATG 610406 Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTG------TTGT--ATCTGCCTTCCGACT 155811 |||||| | |||| |||| |||| ||| ||||| ||| ||| Sbjct 610407 GCATACCAGAGCTTTTGGGCCTTAAGAGTCTTGCGACCCTTGCCCATCTG--TTCGTACT 610464 Query 155812 CATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACT 155871 | || |||| || | | | ||||||||||| || || || |||||||||| Sbjct 610465 ----TCTCGTATAAGGCCTC--GAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACT 610518 Query 155872 TATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATACAT 155928 || |||||| | || | ||| | || || | ||| | || ||| || | || Sbjct 610519 CATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTC---TACTCTCTTCATGAAGAGAT 610575 Query 155929 CACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCT 155988 || ||||| |||| ||||||||| | || ||| || | ||| || |||| Sbjct 610576 CAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCT 610635 Query 155989 TCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAAC 156048 |||| || ||||| || || | ||| | || ||||| ||||| || |||||| Sbjct 610636 TCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAG 610695 Query 156049 TACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 ||| | | | ||||||||||| || || ||||||||||| ||||| ||||||| | Sbjct 610696 CACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGA 610755 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| |||| ||||| ||||| ||||||||||| ||| ||| | || || | | || Sbjct 610756 GCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGC 610815 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCC 156224 | | || | | || ||||| ||||| | |||| || || || ||||| | Sbjct 610816 GGATGCGGTGGACGTTGAGACCAATGCCACCAG-CCATCTTGGAGATCATTGCGCAGGTC 610874 Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAA 156284 || | || | | ||||||| || ||||| || |||| ||| | || |||| ||| Sbjct 610875 TTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAA 610934 Query 156285 CTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATAC 156344 | || | | | || || ||||||||||| |||||||| | || ||| | || || Sbjct 610935 GACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAAC 610994 Query 156345 TTATTAGACAT 156355 || | ||||| Sbjct 610995 TTGCTCGACAT 611005 Score = 87.8 bits (96), Expect = 5e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || || ||||||||| ||||| || |||||||| || |||||||| || | | Sbjct 17440 TGAGCAATGGTCATACGAGACGGAATGGCGTGGGGATTAATAATGATGTCAGGCGTGATG 17499 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 || || || |||||||||||||||| | || ||| | |||||||| ||||| || Sbjct 17500 CCCTCGGCGGTGAAGGGCATATCCTCCT-GTCGATAGGTAACACCAATAGTACCCTTCTG 17558 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||| || |||||| || ||||| Sbjct 17559 ACCGTGACGCGACGCGAACTTGTCGCCAAT 17588 Score = 86.0 bits (94), Expect = 2e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | ||||||||||||||||||||| || |||||||| |||||||| || || Sbjct 17086 GCACCGTGGGCAATCATACAATCACGCTCCATCTCTCCGAAACGTAGACCACCGTCACGT 17145 Query 251545 GCCCTACCCTCGGCAGGCTG 251564 || | |||||| | ||||| Sbjct 17146 GCACGACCCTCCACTGGCTG 17165 >seq1 Length=2214490 Score = 100 bits (110), Expect = 8e-16 Identities = 181/262 (69%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||| || || || ||||||||| | || || || || ||||| || | Sbjct 1081649 CTTGACGAGACGGCGTTGGATGTAACCAGTTTCGGCAGTCTTGACTGCAGTATCGATCAA 1081590 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-GCCCCCCAATAA 302701 ||| | | |||| ||||||||||||| || | || | || |||| | || | | Sbjct 1081589 ACCCTCTCTACCAGCCATAGCATGGAAAAAGAATTCA-CTGGGCGTAAGACCACGGAGGT 1081531 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 | ||| | || || || || || |||||||| || | |||| |||||| || || || | Sbjct 1081530 ATGAGTTTTCGACAAAGCCGCGAGCCTCGGGAGAGTAGTCGTCCTTGGTGAAATGCGGGA 1081471 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821 | || | | || ||||| | ||||||||||| || || ||| |||||||||| | Sbjct 1081470 GAGTGCGATACTTGAAGCCGAAGGGGATACGCTTACCCTCGACGATCTGCTGTCCGACAA 1081411 Query 302822 ACGAAATCATCTGCGAAATATT 302843 | | ||||||| ||||| || Sbjct 1081410 GGGCAGTCATCTGGGAAATGTT 1081389 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 ||||| || | | ||| ||||||||| | || ||||| |||||| | ||||||||| Sbjct 1082440 AGAATCTCCTTGAGACGAGGAACACCAAGCGTGACGTT---CTTGGAAGAAACACCAGCG 1082384 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||| |||| || | || |||| ||||||||||| || || ||||| Sbjct 1082383 AAATGGAAAGTGTTCAACGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATG 1082324 Query 301933 ATACCAACCATTTCTCCTGG 301952 | || |||||||| || || Sbjct 1082323 ACGCCCACCATTTCACCAGG 1082304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471807266000676