Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq11 179 1e-39
seq1 100 8e-16
>seq11
Length=827760
Score = 179 bits (198), Expect = 1e-39
Identities = 483/731 (66%), Gaps = 27/731 (4%)
Strand=Plus/Plus
Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699
|||||| ||| ||||| || || |||||| || | ||||||||||| ||| | |
Sbjct 610287 ATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTTTTGCGG 610346
Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759
|| |||||||||||| || ||| | ||| | |||||||| | || || || || ||
Sbjct 610347 TTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATG 610406
Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTG------TTGT--ATCTGCCTTCCGACT 155811
|||||| | |||| |||| |||| ||| ||||| ||| |||
Sbjct 610407 GCATACCAGAGCTTTTGGGCCTTAAGAGTCTTGCGACCCTTGCCCATCTG--TTCGTACT 610464
Query 155812 CATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACT 155871
| || |||| || | | | ||||||||||| || || || ||||||||||
Sbjct 610465 ----TCTCGTATAAGGCCTC--GAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACT 610518
Query 155872 TATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATACAT 155928
|| |||||| | || | ||| | || || | ||| | || ||| || | ||
Sbjct 610519 CATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTC---TACTCTCTTCATGAAGAGAT 610575
Query 155929 CACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCT 155988
|| ||||| |||| ||||||||| | || ||| || | ||| || ||||
Sbjct 610576 CAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCT 610635
Query 155989 TCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAAC 156048
|||| || ||||| || || | ||| | || ||||| ||||| || ||||||
Sbjct 610636 TCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAG 610695
Query 156049 TACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105
||| | | | ||||||||||| || || ||||||||||| ||||| ||||||| |
Sbjct 610696 CACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGA 610755
Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165
|||| |||| ||||| ||||| ||||||||||| ||| ||| | || || | | ||
Sbjct 610756 GCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGC 610815
Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCC 156224
| | || | | || ||||| ||||| | |||| || || || ||||| |
Sbjct 610816 GGATGCGGTGGACGTTGAGACCAATGCCACCAG-CCATCTTGGAGATCATTGCGCAGGTC 610874
Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAA 156284
|| | || | | ||||||| || ||||| || |||| ||| | || |||| |||
Sbjct 610875 TTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAA 610934
Query 156285 CTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATAC 156344
| || | | | || || ||||||||||| |||||||| | || ||| | || ||
Sbjct 610935 GACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAAC 610994
Query 156345 TTATTAGACAT 156355
|| | |||||
Sbjct 610995 TTGCTCGACAT 611005
Score = 87.8 bits (96), Expect = 5e-12
Identities = 111/150 (74%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
|| || || ||||||||| ||||| || |||||||| || |||||||| || | |
Sbjct 17440 TGAGCAATGGTCATACGAGACGGAATGGCGTGGGGATTAATAATGATGTCAGGCGTGATG 17499
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957
|| || || |||||||||||||||| | || ||| | |||||||| ||||| ||
Sbjct 17500 CCCTCGGCGGTGAAGGGCATATCCTCCT-GTCGATAGGTAACACCAATAGTACCCTTCTG 17558
Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987
|||||||| || |||||| || |||||
Sbjct 17559 ACCGTGACGCGACGCGAACTTGTCGCCAAT 17588
Score = 86.0 bits (94), Expect = 2e-11
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|||||||| | ||||||||||||||||||||| || |||||||| |||||||| || ||
Sbjct 17086 GCACCGTGGGCAATCATACAATCACGCTCCATCTCTCCGAAACGTAGACCACCGTCACGT 17145
Query 251545 GCCCTACCCTCGGCAGGCTG 251564
|| | |||||| | |||||
Sbjct 17146 GCACGACCCTCCACTGGCTG 17165
>seq1
Length=2214490
Score = 100 bits (110), Expect = 8e-16
Identities = 181/262 (69%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | ||| || || || ||||||||| | || || || || ||||| || |
Sbjct 1081649 CTTGACGAGACGGCGTTGGATGTAACCAGTTTCGGCAGTCTTGACTGCAGTATCGATCAA 1081590
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-GCCCCCCAATAA 302701
||| | | |||| ||||||||||||| || | || | || |||| | || | |
Sbjct 1081589 ACCCTCTCTACCAGCCATAGCATGGAAAAAGAATTCA-CTGGGCGTAAGACCACGGAGGT 1081531
Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761
| ||| | || || || || || |||||||| || | |||| |||||| || || || |
Sbjct 1081530 ATGAGTTTTCGACAAAGCCGCGAGCCTCGGGAGAGTAGTCGTCCTTGGTGAAATGCGGGA 1081471
Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821
| || | | || ||||| | ||||||||||| || || ||| |||||||||| |
Sbjct 1081470 GAGTGCGATACTTGAAGCCGAAGGGGATACGCTTACCCTCGACGATCTGCTGTCCGACAA 1081411
Query 302822 ACGAAATCATCTGCGAAATATT 302843
| | ||||||| ||||| ||
Sbjct 1081410 GGGCAGTCATCTGGGAAATGTT 1081389
Score = 84.2 bits (92), Expect = 6e-11
Identities = 103/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
||||| || | | ||| ||||||||| | || ||||| |||||| | |||||||||
Sbjct 1082440 AGAATCTCCTTGAGACGAGGAACACCAAGCGTGACGTT---CTTGGAAGAAACACCAGCG 1082384
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| |||||||| |||| || | || |||| ||||||||||| || || |||||
Sbjct 1082383 AAATGGAAAGTGTTCAACGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATG 1082324
Query 301933 ATACCAACCATTTCTCCTGG 301952
| || |||||||| || ||
Sbjct 1082323 ACGCCCACCATTTCACCAGG 1082304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471807266000676
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |