Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11 174 2e-37 seq6 147 3e-29 seq15 127 2e-23 seq144 104 3e-16 seq112 102 1e-15 seq20 95.1 1e-13 seq4 93.3 5e-13 >seq11 Length=827760 Score = 174 bits (192), Expect = 2e-37 Identities = 331/489 (68%), Gaps = 15/489 (3%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| || || |||| |||||||| ||||||||||| |||| |||||||| Sbjct 610718 CTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTGGA 610777 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||| |||||||| || | ||| | ||||| ||||| | ||| || | || Sbjct 610778 GGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGACC 610837 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||| || ||| ||||||||| | ||||| ||||| |||||||| || ||||| Sbjct 610838 AATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAAATACCCTC 610897 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||||| | |||||||| || || ||||| || || || | || | || || Sbjct 610898 GATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGGGGGGTACC 610957 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||| || || | || ||||| |||| | |||||| || |||||| Sbjct 610958 AGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAGGT 611017 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| |||||| || |||| | || || || ||| | ||||| Sbjct 611018 CTCGATGACGCGC------------TCAACGTTGTCA---CCCCAGATGCCAACAGCGAC 611062 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| |||||| | |||| | | |||| | ||| ||||| || Sbjct 611063 ACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTACGA 611122 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 | || |||| ||| ||| ||||| || || |||||||||| | |||||| Sbjct 611123 TCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGC 611182 Query 1630545 GGCGTCGAG 1630553 | ||| || Sbjct 611183 AGAGTCAAG 611191 Score = 98.7 bits (108), Expect = 1e-14 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGA 1627393 ||||||| || ||| ||||| | || || || || ||| |||||| |||| | Sbjct 609664 GGTTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGG 609723 Query 1627394 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 1627453 |||| | ||| ||||||||| |||||| || || |||| || |||||| |||| | Sbjct 609724 GCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGA 609783 Query 1627454 CGAGGAGCGAGTTGCGCAGGCCGTGCTG-TCGAACTAGCGCGCGCAGCGCGTCCCAGTCC 1627512 |||| || |||||||| | |||||||| | || || || | ||| |||||||||||| Sbjct 609784 CGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCT-GCTCCTTCAGAGCGTCCCAGTCC 609842 Query 1627513 CAG 1627515 ||| Sbjct 609843 CAG 609845 Score = 98.7 bits (108), Expect = 1e-14 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 1627870 TCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGGCC 1627929 || || || |||||||| |||| || || || |||||||||| ||| || ||||||| Sbjct 610050 TCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGGGCC 610109 Query 1627930 TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCTGG 1627989 || | |||||||||||||||| || || | | ||||||||||| || || |||||| Sbjct 610110 TCCTGGACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTTGCGAACGACAACCTGG 610169 Query 1627990 ACGATCTCGTGCAG 1628003 || |||||| || Sbjct 610170 GTGACCTCGTGGAG 610183 Score = 93.3 bits (102), Expect = 5e-13 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 1628169 GATCTCGGTGCACAGGTTGGC-CGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCA 1628227 |||||| ||||| ||||||| | ||| | ||||||||||||| ||||||| | | Sbjct 610286 GATCTCAGTGCAGAGGTTGGAGCTACGGA-TGGTACCCAGGTTCTTCTGGTTGCTTTTGC 610344 Query 1628228 GGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGA 1628287 ||||| | || ||||||| ||||||| |||| ||| |||||| | || ||| ||| || Sbjct 610345 GGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGA 610404 Query 1628288 TGGCCGACCAGATCT 1628302 |||| |||||| || Sbjct 610405 TGGCATACCAGAGCT 610419 >seq6 Length=1110370 Score = 147 bits (162), Expect = 3e-29 Identities = 98/109 (90%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||||||||||||||||||||| ||||| |||| |||||| | || |||||| Sbjct 450897 GCCTCCAACTACCTCGACATCAAGCCTCTCCTCGACGTTGGCTGCAAGACAGTTGCCAAC 450956 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| |||||||||||||||||||| || ||||||| Sbjct 450957 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACATTCAACATCA 451005 Score = 111 bits (122), Expect = 2e-18 Identities = 173/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| || || |||||||||||||| | || ||||| Sbjct 71543 GCCTTTTGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATA 71484 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||||| | |||||| ||| ||| || |||| || Sbjct 71483 TTCTCCATAAAGTCGAAGGGGTTGGAAGACTTGTAAACCTTGTCGTTGCCAAGAGCAAC- 71425 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 | || |||||||||||||| ||||| |||||||| ||| ||| || ||||||||| | Sbjct 71424 CAAG-AGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAA 71366 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 || || || || | ||| ||| ||||| | ||| |||| |||||| ||||| | Sbjct 71365 GCAGGGCGCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCATCGACAA 71306 Query 868929 TGAT 868932 |||| Sbjct 71305 TGAT 71302 Score = 95.1 bits (104), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | |||||| || | || |||||||||||||||||||| Sbjct 71229 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGACCGGGCATGAGGCCGCGCTT 71170 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||| | ||| || ||| || || |||||||| || || || Sbjct 71169 CTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAAATACCCTCGACAGCAGCGAA 71110 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCC--CTCCTTGTTGATCCACTTCATCGCC 869356 | | | | |||| || ||| |||| | ||| | | | |||||||| | ||| Sbjct 71109 GGCAACCAAACGCTGAGCGAAG-----GAGGACTTCTCATCGCTAATCCACTTGAGGGCC 71055 Query 869357 CAGTCGGCCTTTTT 869370 ||||||||||| || Sbjct 71054 CAGTCGGCCTTCTT 71041 >seq15 Length=739642 Score = 127 bits (140), Expect = 2e-23 Identities = 267/392 (68%), Gaps = 12/392 (3%) Strand=Plus/Plus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||| |||| | |||| | |||| |||| ||||||||||| ||||| | Sbjct 148962 GGCGAGTCCCACGACAGGCCCGTCAGTGTCATCGTCGAGGGCGTGCCGCCCGGCATGGCT 149021 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219 || ||||| ||||||| |||| | || | || ||||| || |||||| | | | Sbjct 149022 CTCACCGAGTCCGACATTCAGCTGGGGCTGAACCGTCGCCGCCCCGGCCAGACCTCCATC 149081 Query 18220 TCCACGCCGC-GCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCT 18278 | ||||| | | ||||| || ||||||||||||||| ||||| ||| || | Sbjct 149082 ACGACGCCCCCGAAACGAAAGGGACCGCGTCATCATCCAGAGTGGCACCGAGTTTGGGGT 149141 Query 18279 CACGCTCGGCTCGCCCGTCGGCCT-CT-TTGTGGCCAACCGCGACCAGCGGCCCGTCGAC 18336 || || || | || | ||| | || || || || |||||||| ||| ||| Sbjct 149142 CAT-CTTGGTACCCCGATTGGCATGCTCTTCCGG--AATGAAGACCAGCGTCCCAAGGAC 149198 Query 18337 TAT------TCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATG 18390 || ||| |||| || | | || || | ||| |||||| || |||||| | Sbjct 149199 TACGGAAACTCCACCATGGACAGGTTCCCCCGTCTCTCCCACGCCAGCTGGACCTACCTC 149258 Query 18391 GCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTC 18450 | ||||||||| ||||||| | ||||| || ||||| || || ||||| |||||| || Sbjct 149259 GAGAAGTACGGCGTCAAGGCCTTCTCGGGTGGCGGCCGCTCTTCCGCCCGTGAGACCATC 149318 Query 18451 ATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 || |||||||||||| |||||||||| Sbjct 149319 GCCCGTGTCGCCGCCGGCAACCTCGCCGAGAA 149350 >seq144 Length=123038 Score = 104 bits (114), Expect = 3e-16 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154 ||||||||||||||||||||||||||| | ||||| || ||||||||||| |||| Sbjct 6020 GGCCTCGGCGAGCCGTGCTTTGACAAGCTTGAGGCTCTCCTTGCCCACGCCATCATGTCT 5961 Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 ||||| || |||||||| |||||||||||| Sbjct 5960 ATCCCTGCGACCAAGGGCTTCGAGATTGGC 5931 Score = 96.9 bits (106), Expect = 4e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 ||||| ||||| |||||||||| |||||| | | || || || |||||||| || | Sbjct 6443 CCGCGCCCCTCCCACGCCGACTGGACCTACCTTGAGAAATATGGTATCAAGGCCTCCACT 6384 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 || || |||||| |||||||||||| | ||||||||||||||||| || ||| Sbjct 6383 GGAGGCGGCCGGAGCAGCGCCCGCGAGACCATTGCCCGCGTCGCCGCCGGCGCTGTTGCC 6324 Query 18478 GAGAAATGGCT 18488 ||||| ||||| Sbjct 6323 GAGAAGTGGCT 6313 >seq112 Length=183373 Score = 102 bits (112), Expect = 1e-15 Identities = 251/372 (67%), Gaps = 18/372 (5%) Strand=Plus/Minus Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751 ||||||||||| | |||||||| || || | || | | | ||||||||||||||||||| Sbjct 26277 GGCGGCGGCGCCGATGGCGTCGA-TGGCGACACCGAGGTTGCCGTCGGTGCCGTTCTTGA 26219 Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811 |||||| || | | ||| | || || | ||||||||| | |||| |||||| |||| Sbjct 26218 AGCCGACGGGGAAGGACAGACCGGAGGCGAGCTCGCGGTGGAGCTGGGACTCGGTGGTGC 26159 Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGC---CAAATAAGGGGCCACCAGA-GGA 1726867 | || || | ||| || | | | ||| || || | |||| ||| || Sbjct 26158 GGGCACCGATGGCACCGACGGAGATGAAGTCGGCGAGGAACTGCGGGG-----AGATGGT 26104 Query 1726868 CT-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCG 1726926 | ||| | ||| ||| | |||| || | ||||| | || ||||| || || | Sbjct 26103 GTCGAGCATCTCACTGGCGATGGGC--AT-GCCGGCGGTGGTCAGGTCGCGGAAGAGCTG 26047 Query 1726927 GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGC 1726986 ||| || |||||| | | | | | | ||||| ||| |||||| || Sbjct 26046 GCGGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCCGGGTCGTTGAT 25987 Query 1726987 CAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCA 1727046 ||||||||||| |||||||| || || ||||| |||| ||||||||||||| ||||| Sbjct 25986 GAGGCCCTTCCAGCCGACGGTGGTTCGGGGCTTCTCGAGGTAGGCGCGCATGATGACGCA 25927 Query 1727047 AAGCGCGTCGCC 1727058 || |||||| Sbjct 25926 GAG---GTCGCC 25918 >seq20 Length=648914 Score = 95.1 bits (104), Expect = 1e-13 Identities = 143/202 (71%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 1572388 GCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCGGGCTCGGG 1572447 ||| ||||||||| ||||||| || | || || ||| | ||||| || |||||| Sbjct 87162 GCCGAAGCCGCCGGCGCCGCGCACGCTCTCCTCGAGCTCGGCGACCTCGACGATCTCGGG 87103 Query 1572448 TTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTG---GACAACGTG 1572504 | || || | || | |||||||| ||| ||||||| ||| || Sbjct 87102 GGTGAAGATGCGCTCCACGACGAGCTGGGCGACGCGG---TCGCCCTCAGCGACCTCGAA 87046 Query 1572505 GTCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATCGAT 1572564 ||||| ||||| |||||||||||| | ||| ||||||||||| |||||||| ||||| Sbjct 87045 GTCGGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTCGGCGTCGAT 86986 Query 1572565 GACGCCTGCGCCGACGTCGATG 1572586 |||||| ||||| ||||||| Sbjct 86985 GACGCCAGCGCCCGTGTCGATG 86964 >seq4 Length=1514310 Score = 93.3 bits (102), Expect = 5e-13 Identities = 202/300 (67%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 1574004 GGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCG 1574063 ||| | ||||| || || || ||||||| |||| |||| | || ||||| Sbjct 817546 GGCATTGACGTTGTCCGTAATCGCATCAAGGGTTTCGCCCAGAAGAAGGTCACGCTGCCC 817605 Query 1574064 CCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAG 1574123 | || ||||| ||| | | || || |||||||||||| || | || || | |||||| Sbjct 817606 CAGGGCCGCCATAAGCTTGTGATTCTTGACGAGGCCGACAGCATGACATCAGGTGCCCAG 817665 Query 1574124 CAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGC 1574183 || ||||| || || ||||| | || |||||||||||||||| ||| | || ||| Sbjct 817666 CAAGCCCTTCGCCGAACAATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGC 817725 Query 1574184 AACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTG 1574243 || ||| | | |||||||| | || ||| || |||||||| || || | || Sbjct 817726 AATCAGTCCAACAAGATCATCGAGCCGCTGCAATCGCGATGCGCCATCCTCCGGTATGCC 817785 Query 1574244 CGCCTGGGTGACGCCCAGATACGCGCGCGCCT-ATGCGATATTGTCGCCGCCGAAAAGGT 1574302 || || ||||| ||| | | ||| || ||| | ||| ||| || |||||||| Sbjct 817786 CGGCTCACTGACGAGCAGGTGGTCAAGCGGCTGCTGC-AGATTATCGAGGCGGAAAAGGT 817844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107094228553716