Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq6 134 2e-25
seq11 131 3e-24
seq4 118 2e-20
seq1 89.7 8e-12
>seq6
Length=1110370
Score = 134 bits (148), Expect = 2e-25
Identities = 95/109 (87%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| |||||||||||||||||||||| |||||||| | || |||||||| || ||||||
Sbjct 450897 GCCTCCAACTACCTCGACATCAAGCCTCTCCTCGACGTTGGCTGCAAGACAGTTGCCAAC 450956
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
| |||||||||||||| |||||||| ||||||||||| || |||||||
Sbjct 450957 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACATTCAACATCA 451005
Score = 104 bits (114), Expect = 4e-16
Identities = 175/250 (70%), Gaps = 4/250 (2%)
Strand=Plus/Minus
Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952
||||| ||||| || ||| | || ||| || || |||||||||||||| | ||
Sbjct 71549 ACGCCGGCCTTTTGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGG 71490
Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GA 794010
||||| |||||| | ||| ||||||| | | ||| ||| ||| || ||
Sbjct 71489 GAGATATTCTCCATAAAGTCGAAGGGGTTGGAAGACTTGTAAACCTTGTCGTTGCCAAGA 71430
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
|| || |||| ||||||||||||||||| ||||||||||| ||| ||| || |||||
Sbjct 71429 GCAAC-CAAG-AGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCA 71372
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||| | || || || || | ||| | | ||||| | ||| |||| |||||| |
Sbjct 71371 TGCCAAGCAGGGCGCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCAT 71312
Query 794131 CGATGATGAT 794140
||| |||||
Sbjct 71311 CGACAATGAT 71302
Score = 98.7 bits (108), Expect = 2e-14
Identities = 96/121 (79%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 794548 GTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606
||||| |||||| ||||||| || | | | | |||| ||||||| ||||||||| ||
Sbjct 70965 GTGTCAATGGCGTTGAAGAGGTACGTGCGT-TGGGCCGGCTCCTTGATGTAGGTGTCAAT 70907
Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
||| |||||||| ||||| ||||||||||| || || ||||||||||| || |||||
Sbjct 70906 GAGCAGCGAGTAAGTCTCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCA 70847
Query 794667 G 794667
|
Sbjct 70846 G 70846
>seq11
Length=827760
Score = 131 bits (144), Expect = 3e-24
Identities = 331/503 (66%), Gaps = 19/503 (4%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||| || || || |||| |||||||| ||||||||||| || | ||||||||
Sbjct 610718 CTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTGGA 610777
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||| |||||||| || | ||| | ||| | ||||| | ||| || | ||
Sbjct 610778 GGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGACC 610837
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||||| || ||| ||||||||| | ||||| | || || || ||||| || |||||
Sbjct 610838 AATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAAATACCCTC 610897
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACG--AGTTTTGCGGGCGCGCCGTG 2073777
||| ||||| | |||||||| | || ||||| || | || | ||| | | | ||
Sbjct 610898 GATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGGGGG--GTA 610955
Query 2073778 CCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAG 2073837
|| || |||||||| || || | || ||| | ||| ||||| | ||||
Sbjct 610956 CCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAG 611015
Query 2073838 GTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCG 2073897
|| ||| |||||| | |||| | || || || ||| | |||
Sbjct 611016 GTCTCGATGACGCGC------------TCAACGTTGTCA---CCCCAGATGCCAACAGCG 611060
Query 2073898 ACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAG 2073957
|| ||||||||||||| |||||||| |||| | | | || | ||| |||||
Sbjct 611061 ACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTAC 611120
Query 2073958 GACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATG 2074017
|| | || |||| | ||| ||||| |||| | |||||| |||| | ||||
Sbjct 611121 GATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATG 611180
Query 2074018 GCGGCGTCGAGGGCCTCCTTGTG 2074040
|| | ||| || ||||||||||
Sbjct 611181 GCAGAGTCAAGCTCCTCCTTGTG 611203
Score = 95.1 bits (104), Expect = 2e-13
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 2069603 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGA 2069662
||||||| || ||| ||||| | || || || || ||| |||||| ||| |
Sbjct 609664 GGTTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGG 609723
Query 2069663 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 2069722
|||| | ||| ||||||||| |||||| || || |||| || |||||| |||| |
Sbjct 609724 GCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGA 609783
Query 2069723 CGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCC 2069782
||||||| |||||||| | |||| ||| | | || || ||| |||||||||||||
Sbjct 609784 CGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCC 609843
Query 2069783 AG 2069784
||
Sbjct 609844 AG 609845
>seq4
Length=1514310
Score = 118 bits (130), Expect = 2e-20
Identities = 208/301 (69%), Gaps = 4/301 (1%)
Strand=Plus/Plus
Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAA--TCGACCTGC 2019198
||| | ||||| || |||| ||||||| | ||| | | ||||| || ||||
Sbjct 817546 GGCATTGACGTTGTCCGTAATCGCATCAAGGGTTTCGC--CCAGAAGAAGGTCACGCTGC 817603
Query 2019199 CGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCC 2019258
| | |||||||| ||| | | || || || ||||||||| || | || || | ||||
Sbjct 817604 CCCAGGGCCGCCATAAGCTTGTGATTCTTGACGAGGCCGACAGCATGACATCAGGTGCCC 817663
Query 2019259 AGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCT 2019318
|||| ||||| || || ||||| | ||| ||||||||||||| || || | ||||
Sbjct 817664 AGCAAGCCCTTCGCCGAACAATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCCT 817723
Query 2019319 GCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTG 2019378
|||| ||| | | ||||||| | || || || ||||||||| | || | ||
Sbjct 817724 GCAATCAGTCCAACAAGATCATCGAGCCGCTGCAATCGCGATGCGCCATCCTCCGGTATG 817783
Query 2019379 CGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGG 2019438
| || ||||| |||| ||| | | | ||| |||| |||||||||| || |||||||
Sbjct 817784 CCCGGCTCACTGACGAGCAGGTGGTCAAGCGGCTGCTGCAGATTATCGAGGCGGAAAAGG 817843
Query 2019439 T 2019439
|
Sbjct 817844 T 817844
>seq1
Length=2214490
Score = 89.7 bits (98), Expect = 8e-12
Identities = 147/207 (71%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 429508 CGCTCCAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGA 429567
||||| || ||| |||| |||||||| || | ||| || ||| | | || | |
Sbjct 1080394 CGCTCGAGTACGGCTGGAAAGTCGAGCGTCATTTAATCACTGGTGACTACATCATCTTCA 1080453
Query 429568 ACCGGCAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACA-AGGTGGTGCCCATGCCC 429626
|||| || ||||| || || | || ||| ||| | |||| || | ||| | |||||
Sbjct 1080454 ACCGTCAACCGTCTCTTCATAAGGAGTCTATGATGGGTCACAGAGTTCGTGTC-ATGCCT 1080512
Query 429627 GG-TCGCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGG 429685
||| || ||||| ||||||||| |||| || | ||||||||||| || |||||
Sbjct 1080513 TACTCG-ACTTTCCGTCTCAACCTGTCCGTCACCTCGCCTTACAACGCCGATTTCGACGG 1080571
Query 429686 CGACGAGATGAACCTGCACGTGCCCCA 429712
||||||||||| || ||||| |||||
Sbjct 1080572 TGACGAGATGAATCTTCACGTCCCCCA 1080598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916188106740572
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |