Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6 134 2e-25 seq11 131 3e-24 seq4 118 2e-20 seq1 89.7 8e-12 >seq6 Length=1110370 Score = 134 bits (148), Expect = 2e-25 Identities = 95/109 (87%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||||||||||||||||||||| |||||||| | || |||||||| || |||||| Sbjct 450897 GCCTCCAACTACCTCGACATCAAGCCTCTCCTCGACGTTGGCTGCAAGACAGTTGCCAAC 450956 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| |||||||| ||||||||||| || ||||||| Sbjct 450957 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACATTCAACATCA 451005 Score = 104 bits (114), Expect = 4e-16 Identities = 175/250 (70%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||| || ||| | || ||| || || |||||||||||||| | || Sbjct 71549 ACGCCGGCCTTTTGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGG 71490 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GA 794010 ||||| |||||| | ||| ||||||| | | ||| ||| ||| || || Sbjct 71489 GAGATATTCTCCATAAAGTCGAAGGGGTTGGAAGACTTGTAAACCTTGTCGTTGCCAAGA 71430 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 || || |||| ||||||||||||||||| ||||||||||| ||| ||| || ||||| Sbjct 71429 GCAAC-CAAG-AGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCA 71372 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || || || || | ||| | | ||||| | ||| |||| |||||| | Sbjct 71371 TGCCAAGCAGGGCGCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCAT 71312 Query 794131 CGATGATGAT 794140 ||| ||||| Sbjct 71311 CGACAATGAT 71302 Score = 98.7 bits (108), Expect = 2e-14 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 794548 GTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606 ||||| |||||| ||||||| || | | | | |||| ||||||| ||||||||| || Sbjct 70965 GTGTCAATGGCGTTGAAGAGGTACGTGCGT-TGGGCCGGCTCCTTGATGTAGGTGTCAAT 70907 Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| |||||||| ||||| ||||||||||| || || ||||||||||| || ||||| Sbjct 70906 GAGCAGCGAGTAAGTCTCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCA 70847 Query 794667 G 794667 | Sbjct 70846 G 70846 >seq11 Length=827760 Score = 131 bits (144), Expect = 3e-24 Identities = 331/503 (66%), Gaps = 19/503 (4%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || || || |||| |||||||| ||||||||||| || | |||||||| Sbjct 610718 CTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTGGA 610777 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||| |||||||| || | ||| | ||| | ||||| | ||| || | || Sbjct 610778 GGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGACC 610837 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||| || ||| ||||||||| | ||||| | || || || ||||| || ||||| Sbjct 610838 AATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAAATACCCTC 610897 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACG--AGTTTTGCGGGCGCGCCGTG 2073777 ||| ||||| | |||||||| | || ||||| || | || | ||| | | | || Sbjct 610898 GATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGGGGG--GTA 610955 Query 2073778 CCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAG 2073837 || || |||||||| || || | || ||| | ||| ||||| | |||| Sbjct 610956 CCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAG 611015 Query 2073838 GTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCG 2073897 || ||| |||||| | |||| | || || || ||| | ||| Sbjct 611016 GTCTCGATGACGCGC------------TCAACGTTGTCA---CCCCAGATGCCAACAGCG 611060 Query 2073898 ACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAG 2073957 || ||||||||||||| |||||||| |||| | | | || | ||| ||||| Sbjct 611061 ACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTAC 611120 Query 2073958 GACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATG 2074017 || | || |||| | ||| ||||| |||| | |||||| |||| | |||| Sbjct 611121 GATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATG 611180 Query 2074018 GCGGCGTCGAGGGCCTCCTTGTG 2074040 || | ||| || |||||||||| Sbjct 611181 GCAGAGTCAAGCTCCTCCTTGTG 611203 Score = 95.1 bits (104), Expect = 2e-13 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 2069603 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGA 2069662 ||||||| || ||| ||||| | || || || || ||| |||||| ||| | Sbjct 609664 GGTTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGG 609723 Query 2069663 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 2069722 |||| | ||| ||||||||| |||||| || || |||| || |||||| |||| | Sbjct 609724 GCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGA 609783 Query 2069723 CGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCC 2069782 ||||||| |||||||| | |||| ||| | | || || ||| ||||||||||||| Sbjct 609784 CGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCC 609843 Query 2069783 AG 2069784 || Sbjct 609844 AG 609845 >seq4 Length=1514310 Score = 118 bits (130), Expect = 2e-20 Identities = 208/301 (69%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAA--TCGACCTGC 2019198 ||| | ||||| || |||| ||||||| | ||| | | ||||| || |||| Sbjct 817546 GGCATTGACGTTGTCCGTAATCGCATCAAGGGTTTCGC--CCAGAAGAAGGTCACGCTGC 817603 Query 2019199 CGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCC 2019258 | | |||||||| ||| | | || || || ||||||||| || | || || | |||| Sbjct 817604 CCCAGGGCCGCCATAAGCTTGTGATTCTTGACGAGGCCGACAGCATGACATCAGGTGCCC 817663 Query 2019259 AGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCT 2019318 |||| ||||| || || ||||| | ||| ||||||||||||| || || | |||| Sbjct 817664 AGCAAGCCCTTCGCCGAACAATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCCT 817723 Query 2019319 GCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTG 2019378 |||| ||| | | ||||||| | || || || ||||||||| | || | || Sbjct 817724 GCAATCAGTCCAACAAGATCATCGAGCCGCTGCAATCGCGATGCGCCATCCTCCGGTATG 817783 Query 2019379 CGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGG 2019438 | || ||||| |||| ||| | | | ||| |||| |||||||||| || ||||||| Sbjct 817784 CCCGGCTCACTGACGAGCAGGTGGTCAAGCGGCTGCTGCAGATTATCGAGGCGGAAAAGG 817843 Query 2019439 T 2019439 | Sbjct 817844 T 817844 >seq1 Length=2214490 Score = 89.7 bits (98), Expect = 8e-12 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 429508 CGCTCCAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGA 429567 ||||| || ||| |||| |||||||| || | ||| || ||| | | || | | Sbjct 1080394 CGCTCGAGTACGGCTGGAAAGTCGAGCGTCATTTAATCACTGGTGACTACATCATCTTCA 1080453 Query 429568 ACCGGCAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACA-AGGTGGTGCCCATGCCC 429626 |||| || ||||| || || | || ||| ||| | |||| || | ||| | ||||| Sbjct 1080454 ACCGTCAACCGTCTCTTCATAAGGAGTCTATGATGGGTCACAGAGTTCGTGTC-ATGCCT 1080512 Query 429627 GG-TCGCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGG 429685 ||| || ||||| ||||||||| |||| || | ||||||||||| || ||||| Sbjct 1080513 TACTCG-ACTTTCCGTCTCAACCTGTCCGTCACCTCGCCTTACAACGCCGATTTCGACGG 1080571 Query 429686 CGACGAGATGAACCTGCACGTGCCCCA 429712 ||||||||||| || ||||| ||||| Sbjct 1080572 TGACGAGATGAATCTTCACGTCCCCCA 1080598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916188106740572