Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq10 127 4e-24
>seq10
Length=843860
Score = 127 bits (140), Expect = 4e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||| || | || ||| || || | ||| || || || || ||||| || || |||||
Sbjct 384439 ACCGCCACGCAGACGGAGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCGCT 384380
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|| | | |||||| || | ||| ||||||||||| || || | || ||||| || ||
Sbjct 384379 CAGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATCAGGGGG 384320
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
|| || ||||| ||||| ||||| | || ||||| |||||||| || || || ||
Sbjct 384319 GATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCAATCGTGTCCGAAGACTCAAC 384260
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || ||||| || ||||||||||| || || || |||||
Sbjct 384259 CTCCAACGTAATTGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 384212
Score = 113 bits (124), Expect = 9e-20
Identities = 155/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || || ||||| || || ||||| || || || || || || |
Sbjct 383984 TACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCG 383925
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | || || || || || || ||||||||||| | | ||| ||||| ||||
Sbjct 383924 AGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAG 383865
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || |||||||| || |||||||| | || ||||| || || |||||| | || |
Sbjct 383864 GGATGCCTTCCTTGTCCTGAATCTTAGACTTGACATTGTCGATGGTATCAGAGGACTCAA 383805
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798
| || | ||| || |||||||| || | ||||| ||
Sbjct 383804 CCTCGAGAGTGATGGTCTTGCCAGTAAGGGTCTTGAC 383768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981820306345772
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |