Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq11 230 2e-55
seq54 132 5e-26
seq10 107 2e-18
seq14 104 2e-17
>seq11
Length=827760
Score = 230 bits (254), Expect = 2e-55
Identities = 989/1544 (64%), Gaps = 51/1544 (3%)
Strand=Plus/Plus
Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319
|| || || ||||||||||| || || || || || | || | |||| || | ||
Sbjct 609666 TTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGC 609725
Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379
|| || |||| ||||||||||| ||||| | ||| | || || |||||| ||| ||
Sbjct 609726 TCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACG 609785
Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439
||||| |||||||| | |||| | | || || | ||||||||| |||||||||||
Sbjct 609786 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAG 609845
Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499
|| ||| || | || ||||||||||||||||| |||||||| | | | |||
Sbjct 609846 AGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAA 609905
Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCG--AGCG 148557
|||||||||| ||| || || | | || |||| | ||| | | | | || |
Sbjct 609906 CCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACT-GCA-CCGACATAGTAAGGG 609963
Query 148558 CGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG--CA-GCGCCGC-CGACTCGCTT 148613
| | | ||| || |||||| || | | ||||||| || | || | || |
Sbjct 609964 CAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGAC---- 610019
Query 148614 TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATG 148673
||| | ||||| || || || || || || ||||| ||||| || || | ||||||
Sbjct 610020 TCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATG 610079
Query 148674 GGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATG 148733
|| ||||| |||||| | ||| || || || ||| ||||||||| || |||
Sbjct 610080 GGGCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATG 610139
Query 148734 ATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA- 148792
|| ||| || ||||| || || |||| || | | | ||| | || |||||
Sbjct 610140 ATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAG 610199
Query 148793 --------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACG 148844
|||| || |||| || | || ||| | ||||| || || |||||
Sbjct 610200 ACACCCTCGTTGTAGTCAACGA---ATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACA 610256
Query 148845 GCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATC 148904
|| ||| || || ||| |||||| | |||||| | ||| || ||| || |||
Sbjct 610257 GCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATG 610316
Query 148905 ACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGT 148964
|||| |||||| || ||||| |||| |||| || |||||||| |||||| | ||
Sbjct 610317 GTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGG 610376
Query 148965 CCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTCCTGCGCGCGCACTTGC 149024
||| || || || | || | ||| | ||| | | | || |||
Sbjct 610377 TTGCCTGTCTCGGTTTGAGCCTCGAGGATG--GCATACCAGAGCTTTTGGGC---CTTAA 610431
Query 149025 TGCTCGTAGCGACCCT------CCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGCCT 149076
|| | |||||||| ||| ||||| | ||||| || ||||||| |||
Sbjct 610432 GAGTC-TTGCGACCCTTGCCCATCTGTTCGTACTTCTCGTATAAGGC--CTCGAACTCCT 610488
Query 149077 CGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGT 149136
| |||||||| ||| | ||||| ||||||| | |||||||| || | ||| | ||||
Sbjct 610489 CACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGT 610548
Query 149137 CCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCG 149196
| | || | |||||| || ||||| || | ||| || || | ||||| || |
Sbjct 610549 TCTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGG 610608
Query 149197 CCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGT 149256
| | ||||| ||| ||| ||||| | | | | ||| | || ||||
Sbjct 610609 CGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGT 610668
Query 149257 GCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGT 149313
|||| ||||| | || | || | || || ||| ||||| |||||||||||||
Sbjct 610669 GCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGT 610728
Query 149314 GGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAG 149373
|| | |||| ||||| || || | ||| || | || || ||| ||||| || |
Sbjct 610729 ACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGG 610788
Query 149374 TAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-G 149432
| | |||| | |||| || || | ||| ||||||| || ||||| || |
Sbjct 610789 TGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAG 610848
Query 149433 CCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCG 149492
|| | ||| ||||| |||||| ||| || ||| || |||||||| |||
Sbjct 610849 CCAT-CTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCC 610907
Query 149493 CGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAAC 149552
|||||| | || ||||| || ||| || | | || || || |||
Sbjct 610908 TCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAG 610967
Query 149553 ATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCAC 149611
| || || |||||| || || | || || | ||||| | ||| | ||||| ||
Sbjct 610968 AGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCG-ACATCAGGTTGTAGGTCTCGATGAC 611026
Query 149612 GCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCG 149671
||| || | || || || |||||| | ||||| ||||| | ||| ||||| ||||
Sbjct 611027 GCGCTCAACGTTGTCACCCCAGATGCCAACAGCGACACGCATGATCATGTGCTGGGGTCT 611086
Query 149672 CTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCT--AGTGTCTTGTAGCCA 149729
||| || | ||| ||| || || | ||| || | ||| | |||||| ||||
Sbjct 611087 CTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTA--CGATCTCTCCAAGGTCTTGAAGCCG 611144
Query 149730 AAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773
||||| | ||||| ||||||||| ||| | | ||||| | |||
Sbjct 611145 AAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCAGAGTC 611188
>seq54
Length=312047
Score = 132 bits (146), Expect = 5e-26
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||| ||||| || ||||| ||| || ||| ||||||||||||||| ||
Sbjct 98780 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 98721
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || || |||||||||||||| |||||||| |||||||| |||||| ||||
Sbjct 98720 GCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 98661
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | || | ||||||| | |||||| || | ||||| || || || || || ||
Sbjct 98660 ACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTC 98601
Query 133644 TTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 98600 TTCACGAAGATCTGCATG 98583
>seq10
Length=843860
Score = 107 bits (118), Expect = 2e-18
Identities = 135/183 (74%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | ||||||||| ||||| |||||||| ||| | ||| ||| |||||| ||
Sbjct 383682 AAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACC-GTCCTCAAG 383624
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||||||||| ||| | || || |||||||||||||||||||| || |||||||| ||
Sbjct 383623 CTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAAT 383564
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||| | | || | || || | || ||| || || | |||| ||| |||||
Sbjct 383563 CTTGGACTTCACGTTGTCGATAGTATCAGAGGACTCGACCTCCAGAGTGATGGTCTTGCC 383504
Query 133634 GGT 133636
|||
Sbjct 383503 GGT 383501
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| || || ||| ||| | || || |||||||| ||
Sbjct 384180 GTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCA-TCTTCCAGCTGCTTTCC 384122
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| |||| | ||||||||||||||||| ||||| |||||||| ||||| |||
Sbjct 384121 GGCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTT 384062
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | || | |||||| | | || || || | |||| || || || |||| ||
Sbjct 384061 CACGTTGTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTTCCAGTCAATGT 384002
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 384001 CTTGACGAAGATCTGCAT 383984
Score = 82.4 bits (90), Expect = 7e-11
Identities = 138/197 (70%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | |||||| || || || || ||||| || | ||| | | | ||||| ||
Sbjct 383961 AAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCA-TCCTCAAG 383903
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||||||||| || | || | || ||||| || |||||||||||||||||||| ||
Sbjct 383902 CTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGGATGCCTTCCTTGTCCTGAAT 383843
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||||| | || | || || | || ||| || |||| |||| ||| |||||
Sbjct 383842 CTTAGACTTGACATTGTCGATGGTATCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCC 383783
Query 133634 GGTCAGAGTTTTTACGA 133650
|| || || || ||||
Sbjct 383782 AGTAAGGGTCTTGACGA 383766
>seq14
Length=768254
Score = 104 bits (114), Expect = 2e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||||||||||||||| ||| | || | ||||||||||| || |||||||| ||||||
Sbjct 490635 TCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 490694
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | || | |||||| | || ||| || || | ||| | |
Sbjct 490695 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCTGAGGACTCGACCTCAAGGGTAATG 490754
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652
|| || || ||||| || || ||||||
Sbjct 490755 GTCTTACCCGTCAGGGTCTTCACGAAA 490781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483417488567520
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