Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq11 230 2e-55 seq54 132 5e-26 seq10 107 2e-18 seq14 104 2e-17 >seq11 Length=827760 Score = 230 bits (254), Expect = 2e-55 Identities = 989/1544 (64%), Gaps = 51/1544 (3%) Strand=Plus/Plus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || || ||||||||||| || || || || || | || | |||| || | || Sbjct 609666 TTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGC 609725 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 || || |||| ||||||||||| ||||| | ||| | || || |||||| ||| || Sbjct 609726 TCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACG 609785 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 ||||| |||||||| | |||| | | || || | ||||||||| ||||||||||| Sbjct 609786 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAG 609845 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 || ||| || | || ||||||||||||||||| |||||||| | | | ||| Sbjct 609846 AGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAA 609905 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCG--AGCG 148557 |||||||||| ||| || || | | || |||| | ||| | | | | || | Sbjct 609906 CCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACT-GCA-CCGACATAGTAAGGG 609963 Query 148558 CGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG--CA-GCGCCGC-CGACTCGCTT 148613 | | | ||| || |||||| || | | ||||||| || | || | || | Sbjct 609964 CAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGAC---- 610019 Query 148614 TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATG 148673 ||| | ||||| || || || || || || ||||| ||||| || || | |||||| Sbjct 610020 TCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATG 610079 Query 148674 GGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATG 148733 || ||||| |||||| | ||| || || || ||| ||||||||| || ||| Sbjct 610080 GGGCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATG 610139 Query 148734 ATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA- 148792 || ||| || ||||| || || |||| || | | | ||| | || ||||| Sbjct 610140 ATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAG 610199 Query 148793 --------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACG 148844 |||| || |||| || | || ||| | ||||| || || ||||| Sbjct 610200 ACACCCTCGTTGTAGTCAACGA---ATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACA 610256 Query 148845 GCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATC 148904 || ||| || || ||| |||||| | |||||| | ||| || ||| || ||| Sbjct 610257 GCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATG 610316 Query 148905 ACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGT 148964 |||| |||||| || ||||| |||| |||| || |||||||| |||||| | || Sbjct 610317 GTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGG 610376 Query 148965 CCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTCCTGCGCGCGCACTTGC 149024 ||| || || || | || | ||| | ||| | | | || ||| Sbjct 610377 TTGCCTGTCTCGGTTTGAGCCTCGAGGATG--GCATACCAGAGCTTTTGGGC---CTTAA 610431 Query 149025 TGCTCGTAGCGACCCT------CCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGCCT 149076 || | |||||||| ||| ||||| | ||||| || ||||||| ||| Sbjct 610432 GAGTC-TTGCGACCCTTGCCCATCTGTTCGTACTTCTCGTATAAGGC--CTCGAACTCCT 610488 Query 149077 CGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGT 149136 | |||||||| ||| | ||||| ||||||| | |||||||| || | ||| | |||| Sbjct 610489 CACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGT 610548 Query 149137 CCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCG 149196 | | || | |||||| || ||||| || | ||| || || | ||||| || | Sbjct 610549 TCTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGG 610608 Query 149197 CCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGT 149256 | | ||||| ||| ||| ||||| | | | | ||| | || |||| Sbjct 610609 CGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGT 610668 Query 149257 GCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGT 149313 |||| ||||| | || | || | || || ||| ||||| ||||||||||||| Sbjct 610669 GCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGT 610728 Query 149314 GGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAG 149373 || | |||| ||||| || || | ||| || | || || ||| ||||| || | Sbjct 610729 ACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGG 610788 Query 149374 TAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-G 149432 | | |||| | |||| || || | ||| ||||||| || ||||| || | Sbjct 610789 TGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAG 610848 Query 149433 CCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCG 149492 || | ||| ||||| |||||| ||| || ||| || |||||||| ||| Sbjct 610849 CCAT-CTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCC 610907 Query 149493 CGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAAC 149552 |||||| | || ||||| || ||| || | | || || || ||| Sbjct 610908 TCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAG 610967 Query 149553 ATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCAC 149611 | || || |||||| || || | || || | ||||| | ||| | ||||| || Sbjct 610968 AGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCG-ACATCAGGTTGTAGGTCTCGATGAC 611026 Query 149612 GCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCG 149671 ||| || | || || || |||||| | ||||| ||||| | ||| ||||| |||| Sbjct 611027 GCGCTCAACGTTGTCACCCCAGATGCCAACAGCGACACGCATGATCATGTGCTGGGGTCT 611086 Query 149672 CTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCT--AGTGTCTTGTAGCCA 149729 ||| || | ||| ||| || || | ||| || | ||| | |||||| |||| Sbjct 611087 CTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTA--CGATCTCTCCAAGGTCTTGAAGCCG 611144 Query 149730 AAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 ||||| | ||||| ||||||||| ||| | | ||||| | ||| Sbjct 611145 AAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCAGAGTC 611188 >seq54 Length=312047 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| || ||| ||||||||||||||| || Sbjct 98780 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 98721 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || |||||||||||||| |||||||| |||||||| |||||| |||| Sbjct 98720 GCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 98661 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| | |||||| || | ||||| || || || || || || Sbjct 98660 ACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTC 98601 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 98600 TTCACGAAGATCTGCATG 98583 >seq10 Length=843860 Score = 107 bits (118), Expect = 2e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| |||||||| ||| | ||| ||| |||||| || Sbjct 383682 AAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACC-GTCCTCAAG 383624 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || || |||||||||||||||||||| || |||||||| || Sbjct 383623 CTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAAT 383564 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | || || | || ||| || || | |||| ||| ||||| Sbjct 383563 CTTGGACTTCACGTTGTCGATAGTATCAGAGGACTCGACCTCCAGAGTGATGGTCTTGCC 383504 Query 133634 GGT 133636 ||| Sbjct 383503 GGT 383501 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || || ||| ||| | || || |||||||| || Sbjct 384180 GTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCA-TCTTCCAGCTGCTTTCC 384122 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | ||||||||||||||||| ||||| |||||||| ||||| ||| Sbjct 384121 GGCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTT 384062 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | |||||| | | || || || | |||| || || || |||| || Sbjct 384061 CACGTTGTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTTCCAGTCAATGT 384002 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 384001 CTTGACGAAGATCTGCAT 383984 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||| || || || || ||||| || | ||| | | | ||||| || Sbjct 383961 AAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCA-TCCTCAAG 383903 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || | || ||||| || |||||||||||||||||||| || Sbjct 383902 CTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGGATGCCTTCCTTGTCCTGAAT 383843 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | || || | || ||| || |||| |||| ||| ||||| Sbjct 383842 CTTAGACTTGACATTGTCGATGGTATCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCC 383783 Query 133634 GGTCAGAGTTTTTACGA 133650 || || || || |||| Sbjct 383782 AGTAAGGGTCTTGACGA 383766 >seq14 Length=768254 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| ||| | || | ||||||||||| || |||||||| |||||| Sbjct 490635 TCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 490694 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | |||||| | || ||| || || | ||| | | Sbjct 490695 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCTGAGGACTCGACCTCAAGGGTAATG 490754 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || || || ||||| || || |||||| Sbjct 490755 GTCTTACCCGTCAGGGTCTTCACGAAA 490781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417488567520