Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq11 140 3e-28
>seq11
Length=827760
Score = 140 bits (154), Expect = 3e-28
Identities = 729/1143 (64%), Gaps = 39/1143 (3%)
Strand=Plus/Plus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952
||||| |||||||||||||| || || ||||| | | || | ||| ||| | |||
Sbjct 609666 TTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGC 609725
Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012
|| || ||||||| ||||| || || || | ||| | || || |||||| ||| ||
Sbjct 609726 TCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACG 609785
Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072
| || || || || | ||||| | ||| | ||||||| || | |||||||||
Sbjct 609786 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAG 609845
Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132
| ||||||| | || |||||||||||||||||||| | || || | ||
Sbjct 609846 AGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAA 609905
Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAA-TTCACAGCTTGCCTCG--AGC 147189
|| || |||| |||| || || || ||||| | ||| | | | | ||
Sbjct 609906 CCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACTGCACCG---ACATAGTAAGG 609962
Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCG 147249
|| ||| ||| || || ||| || | ||||| ||| | ||||| ||||
Sbjct 609963 GCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGACTCG 610022
Query 147250 TAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGT 147309
| ||||| || ||| || |||||||| || | |||||| | ||||| || || ||
Sbjct 610023 AAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATGGGG 610082
Query 147310 CGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAATAA 147367
|| || |||||| | | || || || | || ||||||||| |||||| |
Sbjct 610083 CGGTGGCGCATGTTGCT--GTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATGA 610140
Query 147368 TCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA-- 147425
| |||||||||| || || ||||| | || | | ||| |||| ||| || ||
Sbjct 610141 TTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGA 610200
Query 147426 -AGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGG 147484
| | ||| | | || ||| || | || ||| | || ||||| || || || |
Sbjct 610201 CACCCTCGTTGTAGTCA---ACGAATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACAG 610257
Query 147485 CCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATG 147543
| ||| || |||| || ||||| | ||| || | ||| |||||| || |||
Sbjct 610258 CGACCTCGTCAGGCG-CGGAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATG 610316
Query 147544 ACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 147603
|||| || | ||| |||||||| || ||| || || ||| |||||||| | ||
Sbjct 610317 GTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGG 610376
Query 147604 CCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACC 147660
||| |||||| ||| | || | ||| | ||| || | || || |
Sbjct 610377 TTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACC---AGAGCTTTTGGGCCTTAAGA 610433
Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720
|| ||| |||| | ||||||| |||||| || ||| ||||| || |||
Sbjct 610434 GTCTTGCGACCCTTGCCCATCTGTTCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCG 610493
Query 147721 TAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCG-- 147778
||||| |||||||| || || |||| || || ||||| || | ||| ||| ||||
Sbjct 610494 TAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAGAGTCCA---GTC-TCCGTT 610549
Query 147779 CGTT--AACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGC 147836
| || || | ||| || ||||| || | ||| || || | ||| || || ||
Sbjct 610550 CTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGC 610609
Query 147837 TTTGCAATCCTCGGCGCCCATGTTGCGT-TTCAAAT-TAAGCACGCTATAGATGTCGGCG 147894
| || || | ||||| | | | || || ||| | | | ||| ||||||
Sbjct 610610 GCGGACCTCTTCCTTG-CCATGGTTCTTCCGCAGATCTAAAAAGTCGA-AGACATCGGCG 610667
Query 147895 TGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACA 147951
||||| || || | |||| ||| | ||||| |||| || || |||||||||||
Sbjct 610668 TGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACG 610727
Query 147952 TGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTG 148011
| || | |||| ||||| || || | |||||| | | ||| | | ||||| |||
Sbjct 610728 TACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTG 610787
Query 148012 GTG 148014
|||
Sbjct 610788 GTG 610790
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476607935213280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |