Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq11 154 2e-31
seq6 134 2e-25
seq4 95.1 2e-13
seq112 86.0 9e-11
seq20 86.0 9e-11
>seq11
Length=827760
Score = 154 bits (170), Expect = 2e-31
Identities = 344/507 (68%), Gaps = 27/507 (5%)
Strand=Plus/Minus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||||| || ||| |||||||| | ||| ||| ||||| |||| |||||
Sbjct 611203 CACAAGGAGGAGCTTGACTCTGCCATCGTCTACGACCGCGACTTCAACTACCAATACTTC 611144
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAG--TGC--GCGATATTGTCGTCGA 259797
|| | ||||||| | || ||||| | ||| || || | |||| || |
Sbjct 611143 GGCTTCAAGACCTTGGAGAGATCGTACCTC-CTGAAGCTTGACGGCAAGATTGCCG---A 611088
Query 259798 GCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGA 259857
| | |||||| | ||| ||||||||||||| ||||| | |||| | ||
Sbjct 611087 GAGACCCCAGCACATGATCATGCGTGTCGCTGTTGGCA--TCTGGGGT----------GA 611040
Query 259858 CAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCT 259916
||| | | |||| ||| ||| |||||| | |||||| |||| ||| ||||| |
Sbjct 611039 CAACG---TTGAGCGCGTCATCGAGACCTACAACCTGATGTCG-AGCAAGTTCTTCAC-T 610985
Query 259917 CA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTT 259975
|| || | || || ||||| || || || || || | | ||| || || |||||
Sbjct 610984 CACGCCTCTCCTACACTCTTCAACGCTGGTACCCCCCAAGCACAGCTGTCTTCTTGCTTC 610925
Query 259976 CTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCG 260035
|| | |||||||| | || || |||||||| || || ||||| |||||| |||||
Sbjct 610924 CTTGTCGACATGAAAGAGGACTCTATCGAGGGTATTTACGACACCCTCAAGACCTGCGCA 610865
Query 260036 CTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGC 260095
| ||||||||| ||| || ||||| ||| | || ||| | ||||| | |||
Sbjct 610864 ATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGC 610805
Query 260096 GCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTT 260155
| ||| | || |||||||| ||| |||||||| | || |||||||| || || |||
Sbjct 610804 TCTTACATTGCCGGCACCAATGGCACCTCCAACGGTATCGTTCCCATGCTCCGTGTCTTT 610745
Query 260156 AACGACACGGCGCGCTACGTCGACCAG 260182
|| |||| || || ||||||||||||
Sbjct 610744 AATAACACTGCTCGGTACGTCGACCAG 610718
Score = 102 bits (112), Expect = 1e-15
Identities = 355/546 (65%), Gaps = 26/546 (5%)
Strand=Plus/Minus
Query 262878 CTGGGACTGGGACGCACTGCGGGCGTCGGTTCGA-CAGCATGGCCTGCGCAACTCGTTGC 262936
||||||||||||||| ||| || | | | || | ||||| || | |||||||| |||
Sbjct 609845 CTGGGACTGGGACGCTCTGAAGGAG-CAGATCAAGCAGCACGGTGTCCGCAACTCTCTGC 609787
Query 262937 TCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCG 262996
|||| |||| |||||| || |||| || || |||||| ||||||||| ||| ||||
Sbjct 609786 TCGTCGCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCG 609727
Query 262997 AGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCA 263056
|| | ||| |||||| ||| || || || || | ||||| ||| || ||||
Sbjct 609726 AGCCCTACACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTTCAAGTCGTCA 609667
Query 263057 ACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGA--CTTTCGCG- 263113
||| || | ||| | | || | || ||||| | |||| || | |
Sbjct 609666 ACCCATGGCTCTTGAAGGACCTCGTCGACATGGGTCTGTG---GTCCGATGCTATGAAGA 609610
Query 263114 ACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCG 263173
|||| ||||||| | | || || | ||| | | | || | || |||
Sbjct 609609 ACCGTATCATTGCCGAGAACGGTTCTATCCAGAACATCCCCAAC------ATTCCTACCG 609556
Query 263174 ATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTG---ATA 263230
| | ||||| | | |||||| || ||||| | || | || ||| ||| | |
Sbjct 609555 AGGTGAAGGCATTGTACAAGACTGTTTGGGAAATCTCCCAGCG---TACCGTTGTACAGA 609499
Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290
|||| |||||||| | ||| |||||||| ||||| || ||| | || | |
Sbjct 609498 TGGCTGCCGACCGTGGTGCCTTCATCGACCAGTCGCAGTCCCTTAACATCCACATGAAGG 609439
Query 263291 ACCCGAC---GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCA 263347
||||||| || | || ||||| |||||| | || ||| | ||| || |
Sbjct 609438 ACCCGACTATGGGCAAG---ATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTGA 609382
Query 263348 AGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCG 263407
|||| ||||||||||| |||||||| | | | ||||| ||||||| ||||||||||
Sbjct 609381 AGACGGGCATGTACTACCTGCGCACACAGGCTGCTGCTGCGCCCATTCAGTTCACCGTCG 609322
Query 263408 ATCAGG 263413
| ||||
Sbjct 609321 ACCAGG 609316
>seq6
Length=1110370
Score = 134 bits (148), Expect = 2e-25
Identities = 235/336 (70%), Gaps = 7/336 (2%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||||||||||| || || |||||||| |||||| | || |
Sbjct 70633 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATC 70691
Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGC---GACGACGAGCGCCATTTCATCA 1455891
| ||| | | ||||| || | || || ||| | ||||||
Sbjct 70692 TGTCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAGGATGAGAAGTACTTCATCT 70751
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
|||| | |||||||| || |||||| ||| |||||||| |||||| ||| ||
Sbjct 70752 CGCACATTCTCGCCTTCTT-CGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAG 70810
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
||||| | ||||| ||| |||| ||||| || | || ||||| ||||||||
Sbjct 70811 CGCTTCAGCGGCGAGGTTCAAGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATTATG 70870
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071
|| || ||||||||||| || || |||||||| || || ||||||||| ||||||| |||
Sbjct 70871 ATGGAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTACATCAAGGAGCCG 70930
Query 1456072 GTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACAC 1456106
| | | | | || ||||||| |||||| |||||
Sbjct 70931 GCCCA-ACGCACGTACCTCTTCAACGCCATTGACAC 70965
Score = 95.1 bits (104), Expect = 2e-13
Identities = 116/156 (74%), Gaps = 7/156 (4%)
Strand=Plus/Plus
Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCGACACTTTGCCGA 1456180
|| |||||||||||||| | |||||||| | | | ||| | |||| ||| || |
Sbjct 71041 AAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAGTCCTC----CTTCGCTCA 71096
Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239
||| | || | ||| || || |||||||| || || ||| || ||| | ||||
Sbjct 71097 GCGTTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCAT 71156
Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||| ||||||||||||||||||||||||||||||||
Sbjct 71157 CTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 71192
Score = 91.5 bits (100), Expect = 2e-12
Identities = 174/251 (69%), Gaps = 4/251 (2%)
Strand=Plus/Plus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
||||| ||||| |||||| |||| ||| | ||||| | | ||| | || || ||
Sbjct 71302 ATCATTGTCGATGCCGTCAAGATTGAGCAGGAGTTCCTGACGGAGGCCCTTCCTTGCGCC 71361
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| | ||||||||| ||| | || ||| ||||||||||| || |||||||||||||
Sbjct 71362 CTGCTTGGCATGAACTCCAAC-CTGATGAAGCAGTACATTGAGTTC-GTCGCCGACCGCC 71419
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
| | | || || ||| || | ||| ||| | | ||||||| ||| | |||
Sbjct 71420 TCTTGGTTGCTCTTGGCAACG-ACAAGGTTTACAAGTCTTCCAACCCCTTCGACTTTATG 71478
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761
||| ||||| || | |||||||||||||| || || || | || ||| |||
Sbjct 71479 GAGAATATCTCCCTGGGTGGCAAGACCAACTTCTTTGAAAAGCGTGTTGCCGACTACCAA 71538
Query 1456762 AAGGCCGGCGT 1456772
|||||||||||
Sbjct 71539 AAGGCCGGCGT 71549
>seq4
Length=1514310
Score = 95.1 bits (104), Expect = 2e-13
Identities = 168/245 (69%), Gaps = 0/245 (0%)
Strand=Plus/Minus
Query 332810 ACCTTTTCGGCGGCGACAATCTCGCGCAGGCGACCGGCGATTTGGGCGTCAGTGAGGCGC 332869
|||||||| || ||| ||||| |||| || | | | || |||||||||| ||
Sbjct 817844 ACCTTTTCCGCCTCGATAATCTGCAGCAGCCGCTTGACCACCTGCTCGTCAGTGAGCCGG 817785
Query 332870 ACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTG 332929
|| | || |||||||| || || ||||| | |||||||| | | ||| |||
Sbjct 817784 GCATACCGGAGGATGGCGCATCGCGATTGCAGCGGCTCGATGATCTTGTTGGACTGATTG 817725
Query 332930 CAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGT 332989
||||| | ||| || |||||||| |||| | | ||||| || || ||||| ||
Sbjct 817724 CAGGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATCTCCATTGTTCGGCGAAGGGCTTGC 817665
Query 332990 TGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGC 333049
||||| | | || | || |||||||||||| || || | | ||| ||||| || ||
Sbjct 817664 TGGGCACCTGATGTCATGCTGTCGGCCTCGTCAAGAATCACAAGCTTATGGCGGCCCTGG 817605
Query 333050 GGCAG 333054
|||||
Sbjct 817604 GGCAG 817600
>seq112
Length=183373
Score = 86.0 bits (94), Expect = 9e-11
Identities = 110/148 (74%), Gaps = 4/148 (3%)
Strand=Plus/Plus
Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827
|| ||| ||||||| |||||||||||| |||| | ||||||||| | || || | |||
Sbjct 26143 GGTGCCATCGGTGCCCGCACCACCGAGTCCCAGCTCCACCGCGAGCTCGCCTCCGGTCTG 26202
Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886
| | ||| | |||||||| ||| |||||||||||| | | || | | ||| |||| ||
Sbjct 26203 TCCTTCCCCGTCGGCTTCAAGAACGGCACCGACGGCAACCTCGGTGTC-GCCATCGACGC 26261
Query 165887 CGTGCGCACTGCCGCCCAGCCACACACC 165914
| | || | |||||| |||| ||||
Sbjct 26262 CATCGGCGCCGCCGCC--GCCAAGCACC 26287
>seq20
Length=648914
Score = 86.0 bits (94), Expect = 9e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 334525 CATCGACGTTGGCGCCGGCGTCCTTGATGTCGACTATCGCGGCGAGGTTGGCGTCATGCT 334584
||||||| ||||| |||||| | || | |||||| ||||||||||| ||| | ||
Sbjct 86964 CATCGACACGGGCGCTGGCGTCATCGACGCCGACTACCGCGGCGAGGTCAAGGTCCTCCT 87023
Query 334585 TTTCAACCATACCGACGCCGACTATGTCGTCGGCNNNGGCGCACGCATCGCCCAGTTGCT 334644
|||||||| ||||| |||||| | |||| |||| ||| |||||||| | |
Sbjct 87024 CTTCAACCACGCCGACACCGACTTCGAGGTCGCTGAGGGCGACCGCGTCGCCCAGCTCGT 87083
Query 334645 CGTTGAAAAGATTGCCCATCCCGAGCCCGTGTGGGTCGACTCCCTGGACGACACCGAGCG 334704
||| || || | |||||| ||| ||||| | || || || | || |||
Sbjct 87084 CGTGGAGCGCATCTTCACCCCCGAGATCGTCGAGGTCGCCGAGCTCGAGGAGAGCGTGCG 87143
Query 334705 CGGCACCGGCGGCTTTGG 334722
|||| |||||||||| ||
Sbjct 87144 CGGCGCCGGCGGCTTCGG 87161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177758344392776
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