Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq10 138 1e-27 seq54 131 2e-25 seq14 96.9 3e-15 >seq10 Length=843860 Score = 138 bits (152), Expect = 1e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | ||| || || | || ||||||||||| || || || Sbjct 384175 CTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAA 384116 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||||| || |||||||||| ||||| ||||| || Sbjct 384115 AATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCA-CGT 384057 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| ||||| ||||||| |||||| || || || ||||| || || | Sbjct 384056 TGTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTTCCAGTCAATGTCTTGA 383997 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 383996 CGAAGATCTGCAT 383984 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||||||| || ||| || |||| |||| ||||| || ||||| Sbjct 384403 CTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAA 384344 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| || | || | || ||||||||| |||||| ||| | | | Sbjct 384343 AATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCTTGGATCTTCGACTTAACATT 384284 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| || || ||||||| ||| || || || || ||||| || || || Sbjct 384283 GTCAATCGTGTCCGAAGACTCAACCTCCAACGTAATTGTCTTTCCAGTCAACGTCTTGAC 384224 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 384223 GAAGATTTGCAT 384212 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || |||||| ||||| ||||| |||| Sbjct 383703 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAG 383644 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || |||||||| || || || || | ||||||||||| | ||| Sbjct 383643 AGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGG 383584 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||||||| ||||| ||||| |||| | | || || || || || Sbjct 383583 ATACCCTCCTTGTCCTGAATCTTGGACTTCA-CGTTGTCGATAGTATCAGAGGACTCGAC 383525 Query 35689 CTCCACCGTGATCGTTTTACCCGT 35712 ||||| ||||| || || || || Sbjct 383524 CTCCAGAGTGATGGTCTTGCCGGT 383501 >seq54 Length=312047 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | || |||||| || |||||||| |||| | Sbjct 98810 CCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 98751 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || |||||||| || || || |||| ||||||||||| | || Sbjct 98750 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 98691 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||| | | | | | |||||| ||| |||||| Sbjct 98690 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 98631 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || |||||||| | || ||||| || |||||||| Sbjct 98630 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 98584 >seq14 Length=768254 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| |||| | ||| || | || || |||||||| || || || | Sbjct 490600 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 490659 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | || | || |||||||||| |||||| ||| | | | Sbjct 490660 TCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 490719 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | |||||| || || ||||| | || || || |||||||||| || ||||| | Sbjct 490720 CGATCGTGTCTGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 490779 Query 35727 A 35727 | Sbjct 490780 A 490780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450790512063840