Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq15 86.0 5e-12 >seq15 Length=739642 Score = 86.0 bits (94), Expect = 5e-12 Identities = 189/282 (67%), Gaps = 11/282 (4%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||| | || ||||||||| || | || || | || |||||||| ||||| || Sbjct 360172 CCCAAGATTATCAACGGTCCTGAAGTCCTTAACAAGTTCGTCGGTCAATCCGAAGAGAAC 360113 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547 | ||| |||| || || || || |||| | | || | |||| | | | ||| Sbjct 360112 ATCCGAAAGATGTTCGCCGATGCAGA-GAAGGAGTACAAGGAGAAGGGTGACCAGAGTGG 360054 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCT----- 19602 | | || || || || | || || ||||| || |||| ||||| ||||||||| Sbjct 360053 TCTTCATATCATCATCTTTGACGAGTTGGATGCTGTCTGCAAGCAGAGAGGTTCTGGTGC 359994 Query 19603 ----GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658 |||| | |||||| ||||| ||||||||| || || || | || | || || Sbjct 359993 TGGCGGTGGCACTGGAGTTGGTGACAGTGTTGTCAACCAGCTGCTCACCAAGCTCGATGG 359934 Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700 |||| |||| || || || || | |||| || ||||| || Sbjct 359933 TGTTGACCAGCTCAACAACATCCTGCTTATCGGTATGACCAA 359892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453345490740