Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq11 235 7e-57
seq6 127 3e-24
>seq11
Length=827760
Score = 235 bits (260), Expect = 7e-57
Identities = 1162/1834 (63%), Gaps = 47/1834 (3%)
Strand=Plus/Plus
Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864
||||||||||||| || |||| || || ||||||||||| |||||||| || |
Sbjct 609328 TGAACTGAATGGGCGCAGCAGCAGCCTGTGTGCGCAGGTAGTACATGCCCGTCTTCAGAC 609387
Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924
| |||||||| || | ||||| || | |||| | || || | ||||
Sbjct 609388 CGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATAGTCGGGTCCTTCATGT 609447
Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984
|| ||| | || || || ||||||||| || || || || ||||| | |
Sbjct 609448 GGATGTTAAGGGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGTA--- 609504
Query 117985 CATCCTTCATCTTG---ATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGA 118041
|| | | || | |||||||| |||||| |||| | ||| | || || |
Sbjct 609505 CAACGGTACGCTGGGAGATTTCCCAAACAGTCTTGTACAATGCCTTCACCTCGGTAGGAA 609564
Query 118042 TATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGA---TCCTTCATATCCT 118098
| | ||| || ||||| || ||| || | | |||| | | ||||||| | |
Sbjct 609565 TGTTGGGGATGTTCTGGATAGA---ACCGTTCTCGGCAATGATACGGTTCTTCATAGCAT 609621
Query 118099 TTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAA 118156
||||| ||||| || | ||| |||| || ||| ||| | |||| || |||
Sbjct 609622 CGGACCACAGACCCATGTCGACGAGGTCCTTCAAGAGCCATGGGT--TGACGACTTGAAA 609679
Query 118157 CTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATT 118216
||| || || ||| || | | || || |||| ||||| ||||| |||||||||||
Sbjct 609680 CTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATT 609739
Query 118217 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 118276
||| |||||||| || | ||| ||| || |||||||| || | ||| || ||| ||
Sbjct 609740 GTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCG 609799
Query 118277 GAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTC 118336
|| ||| | | | | || | ||||| |||||||||||||| || | | ||
Sbjct 609800 GACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAGAGATCCGAGGGCTT 609859
Query 118337 CCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTC 118396
| | |||||| || ||||||| || || || || | || || ||||| | ||||
Sbjct 609860 AACATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTG 609919
Query 118397 ATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG--AGGGCTGCGTGATACATT 118454
|| || ||||| ||| ||||| | | | | | | ||||| || || || |||
Sbjct 609920 GTAGGGACCCTCCTCCTTAGCCAACT--GCACCGACATAGTAAGGGCAGCATGGTAGATT 609977
Query 118455 GTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCAC 118514
|| || || || || | | || || || || || | | |||
Sbjct 609978 GTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGA 610037
Query 118515 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 118574
| || ||||||| ||||| || |||||||| ||||| ||||| || | ||| ||
Sbjct 610038 GCCAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATGTTG 610097
Query 118575 GACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 118634
|| || || || || || || || ||| || | || || || ||
Sbjct 610098 CTGTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTTGCGA 610157
Query 118635 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG 118694
|||||||| |||| || || ||||| | | | || | | | ||| | | |
Sbjct 610158 ACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA---GACACCCTCGTTGTAG 610214
Query 118695 ACAT---ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 118751
|| | | || | ||| | || ||||| |||||||||| | ||| || |
Sbjct 610215 TCAACGAATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCG 610274
Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811
| |||||| || || || ||||| | ||| || || ||||| |||| |||||| ||
Sbjct 610275 GAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTGG 610334
Query 118812 TTTGACTTTGTGTTACAC-GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 118870
|| | |||| | | | ||||||||||| |||||| | || | || ||||| |||||
Sbjct 610335 TT-GCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTG 610393
Query 118871 GGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCAC---AGTGGCGTTGG---CTCG 118924
| || ||| || || | ||||| || ||| | || | | | | || |
Sbjct 610394 AGCCTCGAGGATGGCATACCAGA-----GCTTTTGGGCCTTAAGAGTCTTGCGACCCTTG 610448
Query 118925 CCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAG 118984
||| ||| |||||||| ||| | ||| || ||||| ||||| | || | ||
Sbjct 610449 CCCATCTGT-TCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAG 610507
Query 118985 CCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 119044
|| || || || ||||| | |||| ||| | || || || || | ||||||
Sbjct 610508 ACCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCAT 610567
Query 119045 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 119104
|||||| || |||||||| || || ||| || || || ||| | ||||| | ||
Sbjct 610568 GAAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCC 610627
Query 119105 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 119164
|| || |||| || |||||||| | || ||| |||||||| || || || || |
Sbjct 610628 ATGGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGAT 610687
Query 119165 CGCGATTGACCCCTTACGACGA---CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAA 119221
|| | | || ||| ||| |||||| || |||| |||||| |||||
Sbjct 610688 GGCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAA 610747
Query 119222 TACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTT 119281
||||| ||||| |||| |||||| | ||| |||||| || || ||| |||
Sbjct 610748 GACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCC 610807
Query 119282 ATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGC 119341
| || | || ||||| || | |||||| || || ||| ||| ||||| ||
Sbjct 610808 GGTAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGC 610867
Query 119342 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 119401
||| | |||| || |||| || || ||||| ||||| | || | ||| |||||
Sbjct 610868 GCAGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAA 610927
Query 119402 GCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGAT 119461
||| |||| || | ||| ||||||||||||||||| || || | ||||| |
Sbjct 610928 GCAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGT 610987
Query 119462 GAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCG 119519
|| | | |||| |||||| || ||||||||| | |||| || || || ||
Sbjct 610988 GA--AGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCC 611045
Query 119520 TGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCG 119579
|| || | | ||| ||||| | ||||| |||||| | || | | || ||
Sbjct 611046 CAGATGCCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCA 611105
Query 119580 AGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613
||| || ||||||| |||||||||||||||
Sbjct 611106 AGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGA 611139
>seq6
Length=1110370
Score = 127 bits (140), Expect = 3e-24
Identities = 333/501 (66%), Gaps = 14/501 (3%)
Strand=Plus/Minus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| |||| ||||| || |||||||| ||||| || ||| | |||||||||||||
Sbjct 71534 TAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATATTCTCCATA 71475
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846
|| || || ||||| || || ||| || | | |||| | ||| ||
Sbjct 71474 AAGTCGAAGGGGTTGGAAGACTTGTAAACCT-TGTCGTTGCCAAGAGCAACCAAGAGGCG 71416
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | |||| |||||||||||| |||| | ||||||||| || | ||| ||
Sbjct 71415 GTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGCGCA 71356
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| || || ||| | |||| ||| |||||| | || || || | |||| | |
Sbjct 71355 AGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCATCGACAATGATGTCCTC 71296
Query 129967 AATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023
|| || | ||| || | | ||| | | | | ||| || ||| || ||
Sbjct 71295 GATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGGGAGTACAGGAGG--CA-GGCGAAGTC 71239
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
||| |||||||||||||| |||||||| || || ||||| |||||| ||||||||
Sbjct 71238 GGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGACCGGGCATGAG 71179
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
|| |||||||| | |||||| || | || | ||| |||||| || ||||| ||
Sbjct 71178 GCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAAATACCCTCGAC 71119
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---AAACCACTT 130200
| ||||| |||| | ||||| ||| ||||| |||||| ||| || ||||||
Sbjct 71118 AGCAGCGAAGGCAACCAAACGCTGAGCGAAGGA---GGACTTCTCATCGCTAATCCACTT 71062
Query 130201 CATCGCCCACTGCGCCTTTTT 130221
| ||||| | ||||| ||
Sbjct 71061 GAGGGCCCAGTCGGCCTTCTT 71041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618430963718880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |