Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq11 235 7e-57 seq6 127 3e-24 >seq11 Length=827760 Score = 235 bits (260), Expect = 7e-57 Identities = 1162/1834 (63%), Gaps = 47/1834 (3%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||||||||| || |||| || || ||||||||||| |||||||| || | Sbjct 609328 TGAACTGAATGGGCGCAGCAGCAGCCTGTGTGCGCAGGTAGTACATGCCCGTCTTCAGAC 609387 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 | |||||||| || | ||||| || | |||| | || || | |||| Sbjct 609388 CGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATAGTCGGGTCCTTCATGT 609447 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || ||| | || || || ||||||||| || || || || ||||| | | Sbjct 609448 GGATGTTAAGGGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGTA--- 609504 Query 117985 CATCCTTCATCTTG---ATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGA 118041 || | | || | |||||||| |||||| |||| | ||| | || || | Sbjct 609505 CAACGGTACGCTGGGAGATTTCCCAAACAGTCTTGTACAATGCCTTCACCTCGGTAGGAA 609564 Query 118042 TATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGA---TCCTTCATATCCT 118098 | | ||| || ||||| || ||| || | | |||| | | ||||||| | | Sbjct 609565 TGTTGGGGATGTTCTGGATAGA---ACCGTTCTCGGCAATGATACGGTTCTTCATAGCAT 609621 Query 118099 TTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAA 118156 ||||| ||||| || | ||| |||| || ||| ||| | |||| || ||| Sbjct 609622 CGGACCACAGACCCATGTCGACGAGGTCCTTCAAGAGCCATGGGT--TGACGACTTGAAA 609679 Query 118157 CTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATT 118216 ||| || || ||| || | | || || |||| ||||| ||||| ||||||||||| Sbjct 609680 CTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATT 609739 Query 118217 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 118276 ||| |||||||| || | ||| ||| || |||||||| || | ||| || ||| || Sbjct 609740 GTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCG 609799 Query 118277 GAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTC 118336 || ||| | | | | || | ||||| |||||||||||||| || | | || Sbjct 609800 GACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTCCCAGTCCCAGAGATCCGAGGGCTT 609859 Query 118337 CCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTC 118396 | | |||||| || ||||||| || || || || | || || ||||| | |||| Sbjct 609860 AACATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTG 609919 Query 118397 ATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG--AGGGCTGCGTGATACATT 118454 || || ||||| ||| ||||| | | | | | | ||||| || || || ||| Sbjct 609920 GTAGGGACCCTCCTCCTTAGCCAACT--GCACCGACATAGTAAGGGCAGCATGGTAGATT 609977 Query 118455 GTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCAC 118514 || || || || || | | || || || || || | | ||| Sbjct 609978 GTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGA 610037 Query 118515 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 118574 | || ||||||| ||||| || |||||||| ||||| ||||| || | ||| || Sbjct 610038 GCCAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATGTTG 610097 Query 118575 GACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 118634 || || || || || || || || ||| || | || || || || Sbjct 610098 CTGTTGCGGGCCTCCTGGACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTTGCGA 610157 Query 118635 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG 118694 |||||||| |||| || || ||||| | | | || | | | ||| | | | Sbjct 610158 ACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA---GACACCCTCGTTGTAG 610214 Query 118695 ACAT---ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 118751 || | | || | ||| | || ||||| |||||||||| | ||| || | Sbjct 610215 TCAACGAATGTGGGCAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCG 610274 Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 | |||||| || || || ||||| | ||| || || ||||| |||| |||||| || Sbjct 610275 GAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTGG 610334 Query 118812 TTTGACTTTGTGTTACAC-GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 118870 || | |||| | | | ||||||||||| |||||| | || | || ||||| ||||| Sbjct 610335 TT-GCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTG 610393 Query 118871 GGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCAC---AGTGGCGTTGG---CTCG 118924 | || ||| || || | ||||| || ||| | || | | | | || | Sbjct 610394 AGCCTCGAGGATGGCATACCAGA-----GCTTTTGGGCCTTAAGAGTCTTGCGACCCTTG 610448 Query 118925 CCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAG 118984 ||| ||| |||||||| ||| | ||| || ||||| ||||| | || | || Sbjct 610449 CCCATCTGT-TCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAG 610507 Query 118985 CCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 119044 || || || || ||||| | |||| ||| | || || || || | |||||| Sbjct 610508 ACCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCAT 610567 Query 119045 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 119104 |||||| || |||||||| || || ||| || || || ||| | ||||| | || Sbjct 610568 GAAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCC 610627 Query 119105 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 119164 || || |||| || |||||||| | || ||| |||||||| || || || || | Sbjct 610628 ATGGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGAT 610687 Query 119165 CGCGATTGACCCCTTACGACGA---CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAA 119221 || | | || ||| ||| |||||| || |||| |||||| ||||| Sbjct 610688 GGCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAA 610747 Query 119222 TACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTT 119281 ||||| ||||| |||| |||||| | ||| |||||| || || ||| ||| Sbjct 610748 GACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCC 610807 Query 119282 ATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGC 119341 | || | || ||||| || | |||||| || || ||| ||| ||||| || Sbjct 610808 GGTAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGC 610867 Query 119342 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 119401 ||| | |||| || |||| || || ||||| ||||| | || | ||| ||||| Sbjct 610868 GCAGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAA 610927 Query 119402 GCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGAT 119461 ||| |||| || | ||| ||||||||||||||||| || || | ||||| | Sbjct 610928 GCAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGT 610987 Query 119462 GAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCG 119519 || | | |||| |||||| || ||||||||| | |||| || || || || Sbjct 610988 GA--AGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCC 611045 Query 119520 TGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCG 119579 || || | | ||| ||||| | ||||| |||||| | || | | || || Sbjct 611046 CAGATGCCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCA 611105 Query 119580 AGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613 ||| || ||||||| ||||||||||||||| Sbjct 611106 AGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGA 611139 >seq6 Length=1110370 Score = 127 bits (140), Expect = 3e-24 Identities = 333/501 (66%), Gaps = 14/501 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| ||||| || |||||||| ||||| || ||| | ||||||||||||| Sbjct 71534 TAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATATTCTCCATA 71475 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846 || || || ||||| || || ||| || | | |||| | ||| || Sbjct 71474 AAGTCGAAGGGGTTGGAAGACTTGTAAACCT-TGTCGTTGCCAAGAGCAACCAAGAGGCG 71416 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||||||||||| |||| | ||||||||| || | ||| || Sbjct 71415 GTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGCGCA 71356 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || ||| | |||| ||| |||||| | || || || | |||| | | Sbjct 71355 AGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCATCGACAATGATGTCCTC 71296 Query 129967 AATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || || | ||| || | | ||| | | | | ||| || ||| || || Sbjct 71295 GATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGGGAGTACAGGAGG--CA-GGCGAAGTC 71239 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||||||||| |||||||| || || ||||| |||||| |||||||| Sbjct 71238 GGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGACCGGGCATGAG 71179 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 || |||||||| | |||||| || | || | ||| |||||| || ||||| || Sbjct 71178 GCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAAATACCCTCGAC 71119 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---AAACCACTT 130200 | ||||| |||| | ||||| ||| ||||| |||||| ||| || |||||| Sbjct 71118 AGCAGCGAAGGCAACCAAACGCTGAGCGAAGGA---GGACTTCTCATCGCTAATCCACTT 71062 Query 130201 CATCGCCCACTGCGCCTTTTT 130221 | ||||| | ||||| || Sbjct 71061 GAGGGCCCAGTCGGCCTTCTT 71041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618430963718880