Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11 286 4e-72 seq6 138 1e-27 >seq11 Length=827760 Score = 286 bits (316), Expect = 4e-72 Identities = 1149/1785 (64%), Gaps = 61/1785 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || | || || || || || |||| ||| Sbjct 611083 CCCCAGCACATGATCATGCGTGTCGCTGTTGGCATCTGGGGTGACAACGTTGAGCGCGTC 611024 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||| ||| || |||||| |||| | | ||| |||||| | || || |||| Sbjct 611023 ATCGAGACCTACAACCTGATGTCGAGCAAGTTCT--TCACTCACGCCTCTCCTACACTCT 610966 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| |||||||| || | | || |||| |||||||||| ||| || || |||| Sbjct 610965 TCAACGCTGGTACCCCCCAAGCACAGCTGTCTTCTTGCTTCCTTGTCGACATGAAAGAGG 610906 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGC 104457 |||| ||| | ||||| || | || || | | || ||||| ||||| ||| ||| Sbjct 610905 ACTCTATCGAGGGTATTTACGACACCCTCAAGACCTG--CGCAATGATCTCCAAGATGGC 610848 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGAC 104517 ||| || ||||| | || |||| | | || | ||| ||| || || Sbjct 610847 TGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCTCTTACATTGCCGGCAC 610788 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 ||||| || | ||||| |||| ||||| || || ||||| ||| || || || Sbjct 610787 CAATGGCACCTCCAACGGTATCGTTCCCATGCTCCGTGTCTTTAATAACACTGCTCGGTA 610728 Query 104578 TGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631 || | || | ||| ||||| || || | || ||||||| ||||| || Sbjct 610727 CGTCGACCAGGGTGGCAACAAGCGTCCC---GGTGCTTTTGCCATCTATCTCGAGCCTTG 610671 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 |||||| ||| || | || || | || |||| ||||| || | || |||| || Sbjct 610670 GCACGCCGATGTCTTCGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGAAGAGGTCCG 610611 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 ||| || || ||| ||||| ||||| || |||||||||||||||||||| || | Sbjct 610610 CGCCCGTGACCTTTTCCTTGCTCTTTGGATCCCTGATCTCTTCATGAAGAGAGTAGAAAA 610551 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 || || | ||| |||| | || || | || |||||||| |||| | || Sbjct 610550 GAACGGAGACTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTTGCCGACTGCTACGG 610491 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG--GAAG----AAGGTCGGGCGACTGC 104865 ||||||||| || ||| | ||| |||||||| || | | ||||| |||| Sbjct 610490 TGAGGAGTTCGAGGCCTTATACGAGAAGTACGAACAGATGGGCAAGGGTCGCAAGACTCT 610431 Query 104866 GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925 | || ||| || | ||| | || || ||| || ||||||||||||| || | Sbjct 610430 TAAGGC-CCAAAAGC-----TCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAA 610377 Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985 || | |||||| ||||| || || |||| || || || || ||||| ||||| Sbjct 610376 CCCCTTCATGCTCTACAAGGATGCTGCCAACCGCAAAAGCAACCAGAAGAACCTGGGTAC 610317 Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 ||| || ||||| ||||| || || ||| | || | | | || ||| || Sbjct 610316 CATCCGTAGCTCCAACCTCTGCACTGAGATCATTGAGTACTCCGCGCCTGACGAGGTCGC 610257 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACAT 105104 |||||||||||| || || | || | |||| | || || | || || | | | Sbjct 610256 TGTGTGTAACCTGGCCTCGCTTGCCTTGCCCACATTCGTTGACTACAACGAGGGTGTC-T 610198 Query 105105 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTA 105164 || | | || |||||||| || || | |||| ||||| |||||| | | Sbjct 610197 ACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTCGTTCGCAACCTCAACAGAATCA 610138 Query 105165 TTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 105224 ||||| || ||||| || || || || || || ||| | ||||| || | Sbjct 610137 TTGATGTCAACCACTACCCGGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGCCCCA 610078 Query 105225 TTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT-GAT 105283 ||||||||||||| |||||||| ||||||| ||| || | || || || || || Sbjct 610077 TTGGTCTCGGTGTGCAGGGTCTTGCGGATGCCTTC-TTGGCTCTCCGCATGCCCTTCGAG 610019 Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343 || ||||| || |||| | ||||| ||||| || || || || || ||| Sbjct 610018 TCTCCTGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACAATCTACCATGCTGCCCTT 609959 Query 105344 G--AGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 105401 | | || ||| ||||| ||| || ||||| || | || | |||||||| | Sbjct 609958 ACTATGTCGGTGCAG--TTGGCTAAGGAGGAGGGTCCCTACCAGACGTACGAGGGTTCCC 609901 Query 105402 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG 105461 | | ||| || || | || || | || |||||| | | | || || | || || | Sbjct 609900 CTGTTTCTCAGGGCATTCTCCAGTACGACATGTGGAATGTTAAGCCCTCGGATCTCTGGG 609841 Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 ||||||| ||||| ||||| | |||||| || | ||| | || ||| ||| ||| | | Sbjct 609840 ACTGGGACGCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTCG 609781 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 | || ||||| || ||| |||| | || |||||||| || ||||| ||||| || |||| Sbjct 609780 CGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGCCCT 609721 Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641 |||| | ||||| || | | | ||| || || |||||| | |||||| | Sbjct 609720 ACACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTTCAAGTCGTCAACC--C 609663 Query 105642 AT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC---T 105696 || ||| || | |||||| || || ||||| |||||| | | ||||||| | | | Sbjct 609662 ATGGCTCTTGAAGGACCTCGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCGTAT 609603 Query 105697 CATGGT-GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGA 105755 ||| | || | ||| ||| || || || || | ||||| | || | ||| Sbjct 609602 CATTGCCGAGAACGG----TTCTATCCAGAACATCCCCAACATTCCTACCGAGGTGAAGG 609547 Query 105756 AGTTGTACCGCACAGTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGGCCGCAG 105812 |||||| || ||||||||||| | || | | || | | ||||| || | Sbjct 609546 CATTGTACAAGACTGTTTGGGAAATCTCCCAGCGTACCGTTG---TACAGATGGCTGCCG 609490 Query 105813 ATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAAC 105870 | |||||| |||||| || | |||| ||| | || || |||| | || || Sbjct 609489 ACCGTGGTGCCTTCATCGACC--AGTCGCAGTCCCTTAACATCCACATGAAGGACCCGAC 609432 Query 105871 GATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGAT 105930 ||| |||| || | |||||| | | |||||| ||||| || ||||| || Sbjct 609431 TATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTGAAGACGGGCAT 609372 Query 105931 GTATTACCTCCGATCTAAGGCAAAGGC-GCGCCCAATTCAGTTCA 105974 ||| ||||| || | |||| || |||||| |||||||||| Sbjct 609371 GTACTACCTGCGCACACAGGCTGCTGCTGCGCCC-ATTCAGTTCA 609328 >seq6 Length=1110370 Score = 138 bits (152), Expect = 1e-27 Identities = 161/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAG 94788 |||||||| || |||| ||||| || || ||||| | |||||| || ||| ||| Sbjct 71023 ACAGTTCCTTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAG 71082 Query 94789 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848 || ||||| ||| |||| | | || || || ||| |||||||| |||||| | Sbjct 71083 TCC---TCCTTCGCTCAGCGTTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGT 71139 Query 94849 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908 ||| ||||| | | || | |||||||||||||| || |||||||| ||||| ||| Sbjct 71140 GGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTC 71199 Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||||||||| ||||||||||||||||| || ||| Sbjct 71200 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCAC 71235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583256804663520