Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq11 286 4e-72
seq6 138 1e-27
>seq11
Length=827760
Score = 286 bits (316), Expect = 4e-72
Identities = 1149/1785 (64%), Gaps = 61/1785 (3%)
Strand=Plus/Minus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| ||||||| || || | || || || || || |||| |||
Sbjct 611083 CCCCAGCACATGATCATGCGTGTCGCTGTTGGCATCTGGGGTGACAACGTTGAGCGCGTC 611024
Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339
| ||||| ||| || |||||| |||| | | ||| |||||| | || || ||||
Sbjct 611023 ATCGAGACCTACAACCTGATGTCGAGCAAGTTCT--TCACTCACGCCTCTCCTACACTCT 610966
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
|||| |||||||| || | | || |||| |||||||||| ||| || || ||||
Sbjct 610965 TCAACGCTGGTACCCCCCAAGCACAGCTGTCTTCTTGCTTCCTTGTCGACATGAAAGAGG 610906
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGC 104457
|||| ||| | ||||| || | || || | | || ||||| ||||| ||| |||
Sbjct 610905 ACTCTATCGAGGGTATTTACGACACCCTCAAGACCTG--CGCAATGATCTCCAAGATGGC 610848
Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGAC 104517
||| || ||||| | || |||| | | || | ||| ||| || ||
Sbjct 610847 TGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCTCTTACATTGCCGGCAC 610788
Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577
||||| || | ||||| |||| ||||| || || ||||| ||| || || ||
Sbjct 610787 CAATGGCACCTCCAACGGTATCGTTCCCATGCTCCGTGTCTTTAATAACACTGCTCGGTA 610728
Query 104578 TGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631
|| | || | ||| ||||| || || | || ||||||| ||||| ||
Sbjct 610727 CGTCGACCAGGGTGGCAACAAGCGTCCC---GGTGCTTTTGCCATCTATCTCGAGCCTTG 610671
Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691
|||||| ||| || | || || | || |||| ||||| || | || |||| ||
Sbjct 610670 GCACGCCGATGTCTTCGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGAAGAGGTCCG 610611
Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751
||| || || ||| ||||| ||||| || |||||||||||||||||||| || |
Sbjct 610610 CGCCCGTGACCTTTTCCTTGCTCTTTGGATCCCTGATCTCTTCATGAAGAGAGTAGAAAA 610551
Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811
|| || | ||| |||| | || || | || |||||||| |||| | ||
Sbjct 610550 GAACGGAGACTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTTGCCGACTGCTACGG 610491
Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG--GAAG----AAGGTCGGGCGACTGC 104865
||||||||| || ||| | ||| |||||||| || | | ||||| ||||
Sbjct 610490 TGAGGAGTTCGAGGCCTTATACGAGAAGTACGAACAGATGGGCAAGGGTCGCAAGACTCT 610431
Query 104866 GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925
| || ||| || | ||| | || || ||| || ||||||||||||| || |
Sbjct 610430 TAAGGC-CCAAAAGC-----TCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAA 610377
Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985
|| | |||||| ||||| || || |||| || || || || ||||| |||||
Sbjct 610376 CCCCTTCATGCTCTACAAGGATGCTGCCAACCGCAAAAGCAACCAGAAGAACCTGGGTAC 610317
Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045
||| || ||||| ||||| || || ||| | || | | | || ||| ||
Sbjct 610316 CATCCGTAGCTCCAACCTCTGCACTGAGATCATTGAGTACTCCGCGCCTGACGAGGTCGC 610257
Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACAT 105104
|||||||||||| || || | || | |||| | || || | || || | | |
Sbjct 610256 TGTGTGTAACCTGGCCTCGCTTGCCTTGCCCACATTCGTTGACTACAACGAGGGTGTC-T 610198
Query 105105 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTA 105164
|| | | || |||||||| || || | |||| ||||| |||||| | |
Sbjct 610197 ACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTCGTTCGCAACCTCAACAGAATCA 610138
Query 105165 TTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 105224
||||| || ||||| || || || || || || ||| | ||||| || |
Sbjct 610137 TTGATGTCAACCACTACCCGGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGCCCCA 610078
Query 105225 TTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT-GAT 105283
||||||||||||| |||||||| ||||||| ||| || | || || || || ||
Sbjct 610077 TTGGTCTCGGTGTGCAGGGTCTTGCGGATGCCTTC-TTGGCTCTCCGCATGCCCTTCGAG 610019
Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343
|| ||||| || |||| | ||||| ||||| || || || || || |||
Sbjct 610018 TCTCCTGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACAATCTACCATGCTGCCCTT 609959
Query 105344 G--AGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 105401
| | || ||| ||||| ||| || ||||| || | || | |||||||| |
Sbjct 609958 ACTATGTCGGTGCAG--TTGGCTAAGGAGGAGGGTCCCTACCAGACGTACGAGGGTTCCC 609901
Query 105402 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG 105461
| | ||| || || | || || | || |||||| | | | || || | || || |
Sbjct 609900 CTGTTTCTCAGGGCATTCTCCAGTACGACATGTGGAATGTTAAGCCCTCGGATCTCTGGG 609841
Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521
||||||| ||||| ||||| | |||||| || | ||| | || ||| ||| ||| | |
Sbjct 609840 ACTGGGACGCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTCG 609781
Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581
| || ||||| || ||| |||| | || |||||||| || ||||| ||||| || ||||
Sbjct 609780 CGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGCCCT 609721
Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641
|||| | ||||| || | | | ||| || || |||||| | |||||| |
Sbjct 609720 ACACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTTCAAGTCGTCAACC--C 609663
Query 105642 AT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC---T 105696
|| ||| || | |||||| || || ||||| |||||| | | ||||||| | | |
Sbjct 609662 ATGGCTCTTGAAGGACCTCGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCGTAT 609603
Query 105697 CATGGT-GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGA 105755
||| | || | ||| ||| || || || || | ||||| | || | |||
Sbjct 609602 CATTGCCGAGAACGG----TTCTATCCAGAACATCCCCAACATTCCTACCGAGGTGAAGG 609547
Query 105756 AGTTGTACCGCACAGTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGGCCGCAG 105812
|||||| || ||||||||||| | || | | || | | ||||| || |
Sbjct 609546 CATTGTACAAGACTGTTTGGGAAATCTCCCAGCGTACCGTTG---TACAGATGGCTGCCG 609490
Query 105813 ATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAAC 105870
| |||||| |||||| || | |||| ||| | || || |||| | || ||
Sbjct 609489 ACCGTGGTGCCTTCATCGACC--AGTCGCAGTCCCTTAACATCCACATGAAGGACCCGAC 609432
Query 105871 GATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGAT 105930
||| |||| || | |||||| | | |||||| ||||| || ||||| ||
Sbjct 609431 TATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTGAAGACGGGCAT 609372
Query 105931 GTATTACCTCCGATCTAAGGCAAAGGC-GCGCCCAATTCAGTTCA 105974
||| ||||| || | |||| || |||||| ||||||||||
Sbjct 609371 GTACTACCTGCGCACACAGGCTGCTGCTGCGCCC-ATTCAGTTCA 609328
>seq6
Length=1110370
Score = 138 bits (152), Expect = 1e-27
Identities = 161/216 (75%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAG 94788
|||||||| || |||| ||||| || || ||||| | |||||| || ||| |||
Sbjct 71023 ACAGTTCCTTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAG 71082
Query 94789 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848
|| ||||| ||| |||| | | || || || ||| |||||||| |||||| |
Sbjct 71083 TCC---TCCTTCGCTCAGCGTTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGT 71139
Query 94849 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908
||| ||||| | | || | |||||||||||||| || |||||||| ||||| |||
Sbjct 71140 GGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTC 71199
Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
||||||||||| ||||||||||||||||| || |||
Sbjct 71200 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCAC 71235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583256804663520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |