Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3 143 8e-29 seq10 138 3e-27 seq1 104 7e-17 >seq3 Length=1516797 Score = 143 bits (158), Expect = 8e-29 Identities = 467/723 (65%), Gaps = 2/723 (0%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| || ||||| || ||||| || || || | |||||| || || || || ||| Sbjct 664974 GCTGTCATCACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCGACCAAGGACGCT 664915 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || ||||| || | || || || | || || || || ||||| || || || || Sbjct 664914 GGTCTTATTGCCGGTCTCAACGTCCTGCGCATCATCAACGAGCCCACCGCGGCTGCCATC 664855 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | | || || || |||| || || ||| | ||| Sbjct 664854 GCCTACGGTCTTGACAAGAAGGCCGAGGGTGAGCGCAACGTTCTCATCTTCGATCTTGGT 664795 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 ||||||||||| ||||| || || || || |||| ||||| || || || ||||| | Sbjct 664794 GGTGGTACTTTCGATGTGTCCCTCCTGACCATTGAGGAGGGCATCTTCGAGGTTAAGTCT 664735 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 || |||||||| || || | ||||| || || || || || ||||||||| || || Sbjct 664734 ACCGCTGGTGACACCCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTTAACCACTTC 664675 Query 349910 GTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCG 349968 || || || || ||||| ||||| || | ||| | || | | || |||| Sbjct 664674 GTCAACGAGTTCAAGCG-CAAGCACAAGAAGGATCTATCCACCAACGCCCGCGCTCTGCG 664616 Query 349969 TCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTC 350028 || || | || || || || ||||| ||||| | | || || || |||| ||||| Sbjct 664615 CCGTCTCCGTACCGCTTGCGAGCGTGCCAAGCGCACTCTTTCCTCGTCTGCCCAGACCTC 664556 Query 350029 TATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCG 350088 ||| || || || || || || |||| || |||| | || || || ||||| || Sbjct 664555 TATCGAGATCGACTCGCTCTACGAGGGCATTGACTTCTACACCTCCATCACCCGTGCCCG 664496 Query 350089 GTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATT 350148 ||||| || | || ||| || || | | || || | || || || || | Sbjct 664495 CTTTGAGGAGCTTTGCCAGGACCTGTTCCGCTCCACCATCCAGCCCGTCGACCGCGTCCT 664436 Query 350149 AAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTAC 350208 | || || || || ||| ||| | | || | || | || || ||||| || Sbjct 664435 CACCGACGCCAAGATCGACAAGTCCCAGGTCCACGAGATCGTCCTGGTCGGAGGTTCCAC 664376 Query 350209 ACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAG 350268 ||||| || | || || | | || || | || || ||||| || || | Sbjct 664375 CCGTATCCCCCGCATCCAGAAGCTTATCTCCGACTACTTCAACGGCAAGGAGCCCAACAA 664316 Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328 || || || || ||||| |||||||| || ||||| ||||| ||||| | ||| | || Sbjct 664315 GTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCCGCCATTCTGTC 664256 Query 350329 TGG 350331 ||| Sbjct 664255 TGG 664253 >seq10 Length=843860 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||| || || || ||||| || || || || Sbjct 383986 CATACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTC 383927 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || || ||||||||||| | |||||||||||||| Sbjct 383926 CGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGG 383867 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || ||||| || |||||||| |||| || ||||| || || | |||||| | || Sbjct 383866 AGGGATGCCTTCCTTGTCCTGAATCTTAGACTTGACATTGTCGATGGTATCAGAGGACTC 383807 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||| || || || | ||||| || || || || || || Sbjct 383806 AACCTCGAGAGTGATGGTCTTGCCAGTAAGGGTCTTGAC 383768 Score = 120 bits (132), Expect = 9e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||| || ||||| || |||||||| || || Sbjct 383707 CATACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTC 383648 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || ||||| ||||| ||||| ||||| || || Sbjct 383647 GGAGAGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGG 383588 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || | || || || || || | |||||| | || Sbjct 383587 AGGGATACCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATAGTATCAGAGGACTC 383528 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTT 140720 || || || || | ||||| ||||| | |||| Sbjct 383527 GACCTCCAGAGTGATGGTCTTGCCGGTGACTGTT 383494 Score = 116 bits (128), Expect = 1e-20 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | || || || ||||| || ||||| || || || || || Sbjct 384445 TTACTGACCGCCACGCAGACGGAGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTA 384386 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 ||| | || || || || || | ||| ||||||||||| || ||||| |||||||| Sbjct 384385 ATCGCTCAGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATC 384326 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 ||| || || || || || || || || || | || ||||| ||||||| || || | Sbjct 384325 AGGGGGGATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCAATCGTGTCCGAAGA 384266 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | |||| ||||||||| || | || || || || || ||||| Sbjct 384265 CTCAACCTCCAACGTAATTGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 384212 >seq1 Length=2214490 Score = 104 bits (114), Expect = 7e-17 Identities = 102/131 (78%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || |||||| | || || ||| || || | ||||||||| || |||||||| || Sbjct 1082425 CGAGGAACACCAAGCGTGACGTTC---TTGGAAGAAACACCAGCGAAATGGAAAGTGTTC 1082369 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 | || | || |||| |||||||||||| ||||| |||||||| ||||| |||||||| Sbjct 1082368 AACGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATGACGCCCACCATTTCA 1082309 Query 377578 CCAGGATTGAC 377588 |||||| |||| Sbjct 1082308 CCAGGACTGAC 1082298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515243761020044