Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq3 143 8e-29
seq10 138 3e-27
seq1 104 7e-17
>seq3
Length=1516797
Score = 143 bits (158), Expect = 8e-29
Identities = 467/723 (65%), Gaps = 2/723 (0%)
Strand=Plus/Minus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
||||| || ||||| || ||||| || || || | |||||| || || || || |||
Sbjct 664974 GCTGTCATCACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCGACCAAGGACGCT 664915
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
|| ||||| || | || || || | || || || || ||||| || || || ||
Sbjct 664914 GGTCTTATTGCCGGTCTCAACGTCCTGCGCATCATCAACGAGCCCACCGCGGCTGCCATC 664855
Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789
|| || || ||||| || | | || || || |||| || || ||| | |||
Sbjct 664854 GCCTACGGTCTTGACAAGAAGGCCGAGGGTGAGCGCAACGTTCTCATCTTCGATCTTGGT 664795
Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849
||||||||||| ||||| || || || || |||| ||||| || || || ||||| |
Sbjct 664794 GGTGGTACTTTCGATGTGTCCCTCCTGACCATTGAGGAGGGCATCTTCGAGGTTAAGTCT 664735
Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909
|| |||||||| || || | ||||| || || || || || ||||||||| || ||
Sbjct 664734 ACCGCTGGTGACACCCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTTAACCACTTC 664675
Query 349910 GTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCG 349968
|| || || || ||||| ||||| || | ||| | || | | || ||||
Sbjct 664674 GTCAACGAGTTCAAGCG-CAAGCACAAGAAGGATCTATCCACCAACGCCCGCGCTCTGCG 664616
Query 349969 TCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTC 350028
|| || | || || || || ||||| ||||| | | || || || |||| |||||
Sbjct 664615 CCGTCTCCGTACCGCTTGCGAGCGTGCCAAGCGCACTCTTTCCTCGTCTGCCCAGACCTC 664556
Query 350029 TATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCG 350088
||| || || || || || || |||| || |||| | || || || ||||| ||
Sbjct 664555 TATCGAGATCGACTCGCTCTACGAGGGCATTGACTTCTACACCTCCATCACCCGTGCCCG 664496
Query 350089 GTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATT 350148
||||| || | || ||| || || | | || || | || || || || |
Sbjct 664495 CTTTGAGGAGCTTTGCCAGGACCTGTTCCGCTCCACCATCCAGCCCGTCGACCGCGTCCT 664436
Query 350149 AAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTAC 350208
| || || || || ||| ||| | | || | || | || || ||||| ||
Sbjct 664435 CACCGACGCCAAGATCGACAAGTCCCAGGTCCACGAGATCGTCCTGGTCGGAGGTTCCAC 664376
Query 350209 ACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAG 350268
||||| || | || || | | || || | || || ||||| || || |
Sbjct 664375 CCGTATCCCCCGCATCCAGAAGCTTATCTCCGACTACTTCAACGGCAAGGAGCCCAACAA 664316
Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328
|| || || || ||||| |||||||| || ||||| ||||| ||||| | ||| | ||
Sbjct 664315 GTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCCGCCATTCTGTC 664256
Query 350329 TGG 350331
|||
Sbjct 664255 TGG 664253
>seq10
Length=843860
Score = 138 bits (152), Expect = 3e-27
Identities = 162/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | ||||| || || || ||||| || || || ||
Sbjct 383986 CATACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTC 383927
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| ||||| || || ||||||||||| | ||||||||||||||
Sbjct 383926 CGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGG 383867
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || ||||| || |||||||| |||| || ||||| || || | |||||| | ||
Sbjct 383866 AGGGATGCCTTCCTTGTCCTGAATCTTAGACTTGACATTGTCGATGGTATCAGAGGACTC 383807
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
||| || || || | ||||| || || || || || ||
Sbjct 383806 AACCTCGAGAGTGATGGTCTTGCCAGTAAGGGTCTTGAC 383768
Score = 120 bits (132), Expect = 9e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | ||||| || ||||| || |||||||| || ||
Sbjct 383707 CATACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTC 383648
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || ||||| || || ||||| ||||| ||||| ||||| || ||
Sbjct 383647 GGAGAGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGG 383588
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || || |||||||| || | || || || || || | |||||| | ||
Sbjct 383587 AGGGATACCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATAGTATCAGAGGACTC 383528
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTT 140720
|| || || || | ||||| ||||| | ||||
Sbjct 383527 GACCTCCAGAGTGATGGTCTTGCCGGTGACTGTT 383494
Score = 116 bits (128), Expect = 1e-20
Identities = 166/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563
|||| ||| ||||| | | || || || ||||| || ||||| || || || || ||
Sbjct 384445 TTACTGACCGCCACGCAGACGGAGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTA 384386
Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623
||| | || || || || || | ||| ||||||||||| || ||||| ||||||||
Sbjct 384385 ATCGCTCAGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATC 384326
Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683
||| || || || || || || || || || | || ||||| ||||||| || || |
Sbjct 384325 AGGGGGGATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCAATCGTGTCCGAAGA 384266
Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | |||| ||||||||| || | || || || || || |||||
Sbjct 384265 CTCAACCTCCAACGTAATTGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 384212
>seq1
Length=2214490
Score = 104 bits (114), Expect = 7e-17
Identities = 102/131 (78%), Gaps = 3/131 (2%)
Strand=Plus/Minus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|| || |||||| | || || ||| || || | ||||||||| || |||||||| ||
Sbjct 1082425 CGAGGAACACCAAGCGTGACGTTC---TTGGAAGAAACACCAGCGAAATGGAAAGTGTTC 1082369
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
| || | || |||| |||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct 1082368 AACGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATGACGCCCACCATTTCA 1082309
Query 377578 CCAGGATTGAC 377588
|||||| ||||
Sbjct 1082308 CCAGGACTGAC 1082298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515243761020044
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |