Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq11 262 4e-65 seq31 136 4e-27 >seq11 Length=827760 Score = 262 bits (290), Expect = 4e-65 Identities = 517/758 (68%), Gaps = 24/758 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | || ||| |||||| || ||| ||| ||||| ||| Sbjct 611070 TCATGCGTGTCGCTGTTGGCATCTGGGGTGACAACGTTGAGCGCGTCATCGAGACCTACA 611011 Query 53253 ACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 || | ||| ||| |||| ||| || |||||| | || || || ||||||||||||| Sbjct 611010 ACCTGATGTCGAGC---AAGTTCTTCACTCACGCCTCTCCTACACTCTTCAACGCTGGTA 610954 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | || | ||| |||| |||||||| || | ||||| || ||||| ||||| | Sbjct 610953 CCCCCCAAGCACAGCTGTCTTCTTGCTTCCTTGTCGACATGAAAGAGGACTCTATCGAGG 610894 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | || ||||| || |||||| || || ||||||||| | | ||||| || ||| Sbjct 610893 GTATTTACGACACCCTCAAGACCTGCGCAATGATCTCCAAGATGGCTGGTGGCATTGGTC 610834 Query 53430 TCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 || || || | || |||| || | |||| | || || || || ||| | | Sbjct 610833 TCAACG--TCCACCGCATCCGCGCTACCGGCTCTTACATTGCCGGCACCAATGGCACCTC 610776 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | | || ||||| || |||||||| ||||| || ||||| || ||||||||| ||||||| Sbjct 610775 CAACGGTATCGTTCCCATGCTCCGTGTCTTTAATAACACTGCTCGGTACGTCGACCAGGG 610716 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| ||||| || | || |||||||| |||||||| ||||||||||| | | Sbjct 610715 TGGCAACAAGCGTCCCGGTGCTTTTGCCATCTATCTCGAGCCTTGGCACGCCGATGTCTT 610656 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 || ||| | || ||||| ||| || || | |||||| | ||| ||||||||| || Sbjct 610655 CGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGAAGAGGTCCGCGCCCGTGACCTTTT 610596 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 ||||| ||||| || || ||||||||| | | || || ||| ||| || ||| Sbjct 610595 CCTTGCTCTTTGGATCCCTGATCTCTTCATGAAGAGAGTAGAAAAGAACGGAGACTGGAC 610536 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAACG 53786 || |||||||| || |||||||| || || | | || ||||||||||||||| | | Sbjct 610535 TCTTATGTGCCCCAATGAGTGCCCTGGTCTTGCCGACTG-CTACGGTGAGGAGTTCGAGG 610477 Query 53787 AGATGTATCGGACGTACG--CAGTT----CAGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840 | || || ||||| ||| | |||| ||| |||| | ||||| | Sbjct 610476 CCTTATACGAGAAGTACGAACAGATGGGCAAGGGTCGC------AAGACTCTTAAGGCCC 610423 Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900 || | ||| |||| |||||| || || ||||| || | || | |||| || Sbjct 610422 AAAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAACCCCTTCATGCTCT 610363 Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||||||| | | |||| || ||||||||||||||| Sbjct 610362 ACAAGGATGCTGCCAACCGCAAAAGCAACCAGAAGAAC 610325 Score = 113 bits (124), Expect = 5e-20 Identities = 543/849 (64%), Gaps = 32/849 (4%) Strand=Plus/Minus Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156 ||||| | ||||| ||||| || || | ||||| ||| ||||| ||| | |||| Sbjct 610195 GACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTCGTTCGCAACCTCAACAGAATCATT 610136 Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216 || || |||||||| | | ||| ||||| |||| | || ||||| ||||| Sbjct 610135 GATGTCAACCACTACCCGGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGCCCCATT 610076 Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276 | ||||||| ||||| | || || |||| || ||| | |||||||||| || Sbjct 610075 GGTCTCGGTGTGCAGGGTCTTGCGGATGCCTTCTTGGCTCTCCGCATGCCCTTCGAGTCT 610016 Query 55277 GAACCTG---CTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCT 55332 |||| |||| || | ||| || | || ||| || | |||||| ||| || || Sbjct 610015 ---CCTGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACA-ATCTACCATGCTGCCCT 609960 Query 55333 CGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCC 55392 |||| || |||||| | ||||| ||||| |||||| | | ||| || Sbjct 609959 TACTATGTCGGTGCAGTTGGCTAAGGAGGAGGGTCCCTACCAGACGTACGAGGGTTCCCC 609900 Query 55393 AGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCATG-- 55444 | | |||| ||||||||| ||| | ||| | ||| || || | | | Sbjct 609899 TGTTTCTCAGGGCATTCTCCAGTACGACATGTGGAATGTTAAGCCCTCGGATCTCTGGGA 609840 Query 55445 -TTTGACAAGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGC 55503 | ||| ||||| | | || | | || | |||||||| |||||||| || Sbjct 609839 CTGGGACGCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTCGC 609780 Query 55504 GCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTA 55563 ||| ||||| || || || |||||||| |||||||||| ||| |||||||| || Sbjct 609779 GCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGCCCTA 609720 Query 55564 CACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCA 55623 ||| ||||||| |||| || || ||| || || |||||| | ||||| Sbjct 609719 CACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTTCAAGTCGTCAACCCATG 609660 Query 55624 CCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAAGA--CGGAT- 55678 ||| | |||||||| | || |||| ||| | || |||| || || Sbjct 609659 GCTCTTGAAGGACCTCGTCGACATGGGTCTGTGGT--CCGATGCTATGAAGAACCGTATC 609602 Query 55679 ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCCT-CTGCGTCTCAAGGA 55734 |||| |||||| || ||||||| | | |||||| | | | | |||| Sbjct 609601 ATTGCCGAGAACGGT---TCTATCCAGAACATCCCCAACATTCCTACCGAGG-TGAAGGC 609546 Query 55735 GATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCG 55794 | ||| ||| || ||||| || | ||| | | | | ||| ||| || || Sbjct 609545 ATTGTACAAGACTGTTTGGGAAATCTCCCAGCGTACCGTTGTACAGATGGCTGCCGACCG 609486 Query 55795 TGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGC 55854 |||||| | |||||||||||| ||||| || |||||| |||| || | || | ||| Sbjct 609485 TGGTGCCTTCATCGACCAGTCGCAGTCCCTTAACATCCACATGAAGGACCCGACTATGGG 609426 Query 55855 CAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTA 55914 |||| | | | |||||||| || |||||| || || |||||||| |||||||| Sbjct 609425 CAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTGAAGACGGGCATGTACTA 609366 Query 55915 TCTGCGGAC 55923 ||||| || Sbjct 609365 CCTGCGCAC 609357 >seq31 Length=482729 Score = 136 bits (150), Expect = 4e-27 Identities = 201/285 (71%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094 |||||||| | ||||| || || ||||| || || || | || || | ||| ||| Sbjct 89848 ATGTATCGAGGACTGGCAGCGTCTGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGAG 89789 Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154 ||||| || ||| | |||||||| ||||||||| |||||||| | | | || || Sbjct 89788 GGCTCCAGACAGTTAATGTTGTTGGAGCCCACGAAGTTCTGAGCAAGACCAATGATGGTC 89729 Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214 ||| ||| ||||||||||||| || | ||||||||| | ||||| || ||||| Sbjct 89728 TGCTGAAGAGAGACTTCACCGTGGTGGTAGGACGTCTGCTCGGAAATGTAACCGGCCAAT 89669 Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274 | | |||||| ||| | ||||||| |||||| ||||||||| || ||||| ||| Sbjct 89668 TCAACGACCTTCTGATCCTTGACCAGGTTCCTCTTGAAACAGGCGTAGATAACCTTACGC 89609 Query 152275 TGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 || || |||| || || || ||| ||| || || ||| || Sbjct 89608 TGACCAGGCTTCAGTCCATCGACGACGGAAGGGATGGATCGCATG 89564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212251570400