Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq11 262 4e-65
seq31 136 4e-27
>seq11
Length=827760
Score = 262 bits (290), Expect = 4e-65
Identities = 517/758 (68%), Gaps = 24/758 (3%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| ||||| | || ||| |||||| || ||| ||| ||||| |||
Sbjct 611070 TCATGCGTGTCGCTGTTGGCATCTGGGGTGACAACGTTGAGCGCGTCATCGAGACCTACA 611011
Query 53253 ACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309
|| | ||| ||| |||| ||| || |||||| | || || || |||||||||||||
Sbjct 611010 ACCTGATGTCGAGC---AAGTTCTTCACTCACGCCTCTCCTACACTCTTCAACGCTGGTA 610954
Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369
| || | ||| |||| |||||||| || | ||||| || ||||| ||||| |
Sbjct 610953 CCCCCCAAGCACAGCTGTCTTCTTGCTTCCTTGTCGACATGAAAGAGGACTCTATCGAGG 610894
Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429
| || ||||| || |||||| || || ||||||||| | | ||||| || |||
Sbjct 610893 GTATTTACGACACCCTCAAGACCTGCGCAATGATCTCCAAGATGGCTGGTGGCATTGGTC 610834
Query 53430 TCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487
|| || || | || |||| || | |||| | || || || || ||| | |
Sbjct 610833 TCAACG--TCCACCGCATCCGCGCTACCGGCTCTTACATTGCCGGCACCAATGGCACCTC 610776
Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547
| | || ||||| || |||||||| ||||| || ||||| || ||||||||| |||||||
Sbjct 610775 CAACGGTATCGTTCCCATGCTCCGTGTCTTTAATAACACTGCTCGGTACGTCGACCAGGG 610716
Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607
||| ||||| || | || |||||||| |||||||| ||||||||||| | |
Sbjct 610715 TGGCAACAAGCGTCCCGGTGCTTTTGCCATCTATCTCGAGCCTTGGCACGCCGATGTCTT 610656
Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667
|| ||| | || ||||| ||| || || | |||||| | ||| ||||||||| ||
Sbjct 610655 CGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGAAGAGGTCCGCGCCCGTGACCTTTT 610596
Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727
||||| ||||| || || ||||||||| | | || || ||| ||| || |||
Sbjct 610595 CCTTGCTCTTTGGATCCCTGATCTCTTCATGAAGAGAGTAGAAAAGAACGGAGACTGGAC 610536
Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAACG 53786
|| |||||||| || |||||||| || || | | || ||||||||||||||| | |
Sbjct 610535 TCTTATGTGCCCCAATGAGTGCCCTGGTCTTGCCGACTG-CTACGGTGAGGAGTTCGAGG 610477
Query 53787 AGATGTATCGGACGTACG--CAGTT----CAGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840
| || || ||||| ||| | |||| ||| |||| | ||||| |
Sbjct 610476 CCTTATACGAGAAGTACGAACAGATGGGCAAGGGTCGC------AAGACTCTTAAGGCCC 610423
Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900
|| | ||| |||| |||||| || || ||||| || | || | |||| ||
Sbjct 610422 AAAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAACCCCTTCATGCTCT 610363
Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
|||||||| | | |||| || |||||||||||||||
Sbjct 610362 ACAAGGATGCTGCCAACCGCAAAAGCAACCAGAAGAAC 610325
Score = 113 bits (124), Expect = 5e-20
Identities = 543/849 (64%), Gaps = 32/849 (4%)
Strand=Plus/Minus
Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156
||||| | ||||| ||||| || || | ||||| ||| ||||| ||| | ||||
Sbjct 610195 GACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTCGTTCGCAACCTCAACAGAATCATT 610136
Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216
|| || |||||||| | | ||| ||||| |||| | || ||||| |||||
Sbjct 610135 GATGTCAACCACTACCCGGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGCCCCATT 610076
Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276
| ||||||| ||||| | || || |||| || ||| | |||||||||| ||
Sbjct 610075 GGTCTCGGTGTGCAGGGTCTTGCGGATGCCTTCTTGGCTCTCCGCATGCCCTTCGAGTCT 610016
Query 55277 GAACCTG---CTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCT 55332
|||| |||| || | ||| || | || ||| || | |||||| ||| || ||
Sbjct 610015 ---CCTGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACA-ATCTACCATGCTGCCCT 609960
Query 55333 CGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCC 55392
|||| || |||||| | ||||| ||||| |||||| | | ||| ||
Sbjct 609959 TACTATGTCGGTGCAGTTGGCTAAGGAGGAGGGTCCCTACCAGACGTACGAGGGTTCCCC 609900
Query 55393 AGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCATG-- 55444
| | |||| ||||||||| ||| | ||| | ||| || || | | |
Sbjct 609899 TGTTTCTCAGGGCATTCTCCAGTACGACATGTGGAATGTTAAGCCCTCGGATCTCTGGGA 609840
Query 55445 -TTTGACAAGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGC 55503
| ||| ||||| | | || | | || | |||||||| |||||||| ||
Sbjct 609839 CTGGGACGCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTCGTCGC 609780
Query 55504 GCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTA 55563
||| ||||| || || || |||||||| |||||||||| ||| |||||||| ||
Sbjct 609779 GCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGCCCTA 609720
Query 55564 CACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCA 55623
||| ||||||| |||| || || ||| || || |||||| | |||||
Sbjct 609719 CACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTTCAAGTCGTCAACCCATG 609660
Query 55624 CCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAAGA--CGGAT- 55678
||| | |||||||| | || |||| ||| | || |||| || ||
Sbjct 609659 GCTCTTGAAGGACCTCGTCGACATGGGTCTGTGGT--CCGATGCTATGAAGAACCGTATC 609602
Query 55679 ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCCT-CTGCGTCTCAAGGA 55734
|||| |||||| || ||||||| | | |||||| | | | | ||||
Sbjct 609601 ATTGCCGAGAACGGT---TCTATCCAGAACATCCCCAACATTCCTACCGAGG-TGAAGGC 609546
Query 55735 GATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCG 55794
| ||| ||| || ||||| || | ||| | | | | ||| ||| || ||
Sbjct 609545 ATTGTACAAGACTGTTTGGGAAATCTCCCAGCGTACCGTTGTACAGATGGCTGCCGACCG 609486
Query 55795 TGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGC 55854
|||||| | |||||||||||| ||||| || |||||| |||| || | || | |||
Sbjct 609485 TGGTGCCTTCATCGACCAGTCGCAGTCCCTTAACATCCACATGAAGGACCCGACTATGGG 609426
Query 55855 CAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTA 55914
|||| | | | |||||||| || |||||| || || |||||||| ||||||||
Sbjct 609425 CAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTGAAGACGGGCATGTACTA 609366
Query 55915 TCTGCGGAC 55923
||||| ||
Sbjct 609365 CCTGCGCAC 609357
>seq31
Length=482729
Score = 136 bits (150), Expect = 4e-27
Identities = 201/285 (71%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094
|||||||| | ||||| || || ||||| || || || | || || | ||| |||
Sbjct 89848 ATGTATCGAGGACTGGCAGCGTCTGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGAG 89789
Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154
||||| || ||| | |||||||| ||||||||| |||||||| | | | || ||
Sbjct 89788 GGCTCCAGACAGTTAATGTTGTTGGAGCCCACGAAGTTCTGAGCAAGACCAATGATGGTC 89729
Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214
||| ||| ||||||||||||| || | ||||||||| | ||||| || |||||
Sbjct 89728 TGCTGAAGAGAGACTTCACCGTGGTGGTAGGACGTCTGCTCGGAAATGTAACCGGCCAAT 89669
Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274
| | |||||| ||| | ||||||| |||||| ||||||||| || ||||| |||
Sbjct 89668 TCAACGACCTTCTGATCCTTGACCAGGTTCCTCTTGAAACAGGCGTAGATAACCTTACGC 89609
Query 152275 TGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319
|| || |||| || || || ||| ||| || || ||| ||
Sbjct 89608 TGACCAGGCTTCAGTCCATCGACGACGGAAGGGATGGATCGCATG 89564
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547212251570400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |