Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq11 318 7e-82 seq10 172 6e-38 seq54 163 3e-35 seq14 114 1e-20 seq31 113 5e-20 >seq11 Length=827760 Score = 318 bits (352), Expect = 7e-82 Identities = 1004/1533 (65%), Gaps = 57/1533 (4%) Strand=Plus/Plus Query 80355 AAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTC 80414 |||||| || || ||| ||||| | || | ||| | ||||| ||||| || ||| Sbjct 609677 AAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTC 609736 Query 80415 GTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATT 80474 ||||| || | |||||||| ||||| || |||||||| || |||| | ||| || || Sbjct 609737 ATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTT 609796 Query 80475 CCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCA---ACCCCAAC 80531 || | ||||||| |||||| | ||| || | | | || | || | || | Sbjct 609797 GCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGC-GTCCCAGTCCCAGAGATCCGAGG 609855 Query 80532 GCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAAC 80589 ||| | || ||||||||||| ||| | ||||||| || | || || ||| || || Sbjct 609856 GCT-TAACATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTAC 609914 Query 80590 GTCTCGTACGGGCCCTCCGTCTTGGCCAGCT-CACACGACTCCATAAGGGCCGCGTGATA 80648 |||| ||| || |||||| ||| |||| || ||| |||| ||||||| || || || Sbjct 609915 GTCTGGTAGGGACCCTCCTCCTTAGCCAACTGCAC-CGACATAGTAAGGGCAGCATGGTA 609973 Query 80649 AATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCC 80708 || ||| || | |||||| | | || || | || ||||| | || || Sbjct 609974 GATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCG 610033 Query 80709 CATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTT 80768 | || ||| | || || || ||||| || |||| | || |||||||||||| | Sbjct 610034 GAGAGCCAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCAT 610093 Query 80769 GTT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGT 80827 ||| | | || ||||||| | | ||||| ||| ||| |||| | ||| |||| Sbjct 610094 GTTGCTGTTGCG-GGCCTCCTGGACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGT 610152 Query 80828 TGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT------TGGTTCC 80881 |||| |||||| | || || || || || ||||| |||||| | | ||| Sbjct 610153 TGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGACACCCTCGTTGT 610212 Query 80882 CCTTCACAAATGCCGG-AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCA 80940 | || |||| || ||||| || || ||||| || ||||| || ||||| |||| Sbjct 610213 AGTCAACGAATGTGGGCAAGGCA-AGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGC 610271 Query 80941 TCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTC 81000 | | |||| | ||| || ||||| | || || || ||||||||||| ||| Sbjct 610272 GCGGAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTC 610331 Query 81001 TGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACC 81060 ||||| ||| |||| ||| ||||||||| |||| | ||| | || |||||| Sbjct 610332 TGGTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTT 610391 Query 81061 TGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCT 81120 || | || ||||||||| | ||| | || | ||||| | |||||| ||||| Sbjct 610392 TGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTAAGAGTCTTGCGACCCTTGCCC 610451 Query 81121 -TCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGT 81178 || | | ||||| |||| | ||||||| |||||| | ||| | | || Sbjct 610452 ATCTGTT-CGTACTTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGT-CGGCAAGAC 610509 Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238 | |||||||| || |||||||| || |||||| || || ||||| |||||||| Sbjct 610510 CAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGA 610569 Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298 | ||||||||||| || || ||| ||||| ||| ||| |||| || | || | Sbjct 610570 AGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCAT 610629 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358 |||| |||| || | |||||| | || || || ||||| ||||| ||||| | || Sbjct 610630 GGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGG 610689 Query 81359 CGATCGACCCCTTGCGACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAA 81412 | | | || | |||| ||||||||||| |||||| || ||||| |||| Sbjct 610690 CAAAAGCACC---GGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAA 610746 Query 81413 ATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACC 81472 | ||||| | ||| || | |||||| | || || || || || | || || | Sbjct 610747 AGACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGC 610806 Query 81473 CCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTG 81530 | | ||||| | | || ||| ||||| |||||||| | | ||| || ||| Sbjct 610807 CGGTAGCGCGGATGCGGTGGACGTTG--AGACCAATGCCACCAGCCATCTTGGAGATCAT 610864 Query 81531 AGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAA 81590 || || || | ||| || ||||| |||||||| || | ||||||||| | | Sbjct 610865 TGCGCAGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAG 610924 Query 81591 GAAACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCG 81648 ||| || |||| || | |||| | | || || ||||| ||||| || | ||| Sbjct 610925 GAAGCAAGAAGACAGCT--GTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCG 610982 Query 81649 TGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCA 81708 ||| |||| | | | |||||||||| ||||| || ||||||| || | |||| Sbjct 610983 TGAGTGAAGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCA 611042 Query 81709 CCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG-----CCTGCGT 81763 || || || | ||| |||||||| | ||||| |||||| ||||| | ||| Sbjct 611043 CCCCAGATGCCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCG 611102 Query 81764 TC----------AGGTAC-ATCTTCTGCAAAGTCTTGATGCCGAAGTAACCGAACCCGTA 81812 || |||||| ||| ||| ||| ||||||| ||||||||| | | | | Sbjct 611103 TCAAGCTTCAGGAGGTACGATC-TCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAA 611161 Query 81813 GTCGCGTTCGCTGTCGATCACAGCATCTAGCTC 81845 |||||| ||| | |||| ||| || ||||| Sbjct 611162 GTCGCGGTCGTAGACGATGGCAGAGTCAAGCTC 611194 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || ||||| ||||||||||||||||| || || ||||||||| | |||| Sbjct 609351 GCCTGTGTGCGCAGGTAGTACATGCCCGTCTTCAGACCGAGCTTCCAGCCAGCGAAGTGC 609410 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| ||| | | || |||| || |||| |||||| || ||||| ||||| Sbjct 609411 ATGCTGGTGATCTTGCCCATAGTCGGGTCCTTCATGTGGATGTTAAGGGACTGCGACTGG 609470 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT 80180 |||||| || ||||| || || ||||| Sbjct 609471 TCGATGAAGGCACCACGGTCGGCAGCCAT 609499 >seq10 Length=843860 Score = 172 bits (190), Expect = 6e-38 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| ||||| |||||||| || ||||| ||||||||||| ||||| ||| | Sbjct 383768 GTCAAGACCCTTACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCTGATACCATCGAC 383827 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| |||| |||||||||||||| || || ||||| || ||||| || | || Sbjct 383828 AATGTCAAGTCTAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAGCAACGCTTGATC 383887 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||| || ||||||| || || || | ||||| || ||||||||||| Sbjct 383888 TTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCGGACTACAACATCCAAAAGGAA 383947 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| ||||| | || | ||||| || ||||| Sbjct 383948 TCCACCCTTCACTTGGTGCTCCGTCTCCGTGGTGG 383982 Score = 161 bits (178), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||||||| | || || ||||| ||||| | ||||||||||| Sbjct 384212 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACAATTACGTTGGAGGTTGAGTCTTCG 384271 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || || || ||||||||||| || || || || ||| Sbjct 384272 GACACGATTGACAATGTTAAGTCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGATCAG 384331 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| ||||||||||| |||||| | ||||| | ||| ||||| ||| || || || Sbjct 384332 CAGCGTCTCATTTTTGCTGGAAAGCAATTGGAGGACGGTCGCACCCTGAGC-GATTACAA 384390 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || ||||| || ||| | ||||| || || || || Sbjct 384391 CATCCAGAAGGAGTCAACGCTTCACCTCGTCCTCCGTCTGCGTGGCGGTCA 384441 Score = 159 bits (176), Expect = 4e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || ||||| ||||| ||||| ||||| || | || ||||| | Sbjct 383501 ACCGGCAAGACCATCACTCTGGAGGTCGAGTCCTCTGATACTATCGACAACGTGAAGTCC 383560 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| || ||||| |||||||||||||| || || ||||| ||| Sbjct 383561 AAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTTATCTTCGCTGGCAAG 383620 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||| | ||| ||||| | ||||| ||| | || ||||| ||||| ||||| Sbjct 383621 CAGCTTGAGGACGGTCGCACCCTCTCCGACTACAATATTCAGAAGGAGTCCACCCTTCAC 383680 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | ||||| || ||||| Sbjct 383681 TTGGTGCTCCGTCTCCGTGGTGG 383703 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || || ||||| || || || ||||| || ||| Sbjct 383984 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACAATCACGCTGGAGGTCGAATCATCG 384043 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| | || ||||||||||||||||| |||||||| |||||| Sbjct 384044 GACACGATCGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 384103 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| || || ||||| || || |||| ||| || | | ||||| || Sbjct 384104 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCTGACTACAAC 384163 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || |||||||| || ||| | ||||| || || || Sbjct 384164 ATTCAGAAGGAGTCAACTCTTCACCTTGTCCTTCGTCTGCGTGGAGG 384210 >seq54 Length=312047 Score = 163 bits (180), Expect = 3e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || ||||| || || || |||||||| || |||||||| ||||| Sbjct 98581 ATCATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCG 98640 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || || |||||||||||||| || || || ||| Sbjct 98641 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 98700 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || || || ||||| |||||||| | || ||||| | ||||| Sbjct 98701 CAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTAC 98760 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| |||||||| || || || ||||||| || ||||| Sbjct 98761 AACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTGCGTGGTGG 98810 >seq14 Length=768254 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || || ||||| ||||| |||||||| ||||| || | || Sbjct 490780 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCAGACACGATC 490721 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| || || || ||||||||||| | Sbjct 490720 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTG 490661 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || || || ||||| |||||||||| || ||||| | ||||| || |||| ||| Sbjct 490660 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 490601 Query 27595 G 27595 | Sbjct 490600 G 490600 >seq31 Length=482729 Score = 113 bits (124), Expect = 5e-20 Identities = 201/291 (69%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 31954 GATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTG 32013 |||| || ||| ||||| || ||| | || || || |||||| ||||| ||||| Sbjct 89559 GATAACATGCGATCCATCCCTTCCGTCGTCGATGGACTGAAGCCTGGTCAGCGTAAGGTT 89618 Query 32014 ATATACGCCTGCCTCAAGAAGAACCTG-TCGAGTGACATGAAGGTGGCGCAGCTGTCGGG 32072 || |||||||| |||||| ||||||| || || || |||||| | | || | || Sbjct 89619 ATCTACGCCTGTTTCAAGAGGAACCTGGTCAAGGATCA-GAAGGTCGTTGAATTGGCCGG 89677 Query 32073 CTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGT 32132 ||| | | ||||| ||| |||| |||||||| || | || || ||| ||||| | Sbjct 89678 TTACATTTCCGAGCAGACGTCCTACCACCACGGTGAAGTCTCTCTTCAGCAGACCATCAT 89737 Query 32133 CAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACA 32192 |||||||||||||| || || | || ||| | |||| || ||||| || ||| | Sbjct 89738 TGGTCTTGCTCAGAACTTCGTGGGCTCCAACAACATTAACTGTCTGGAGCCCTCCGGAAA 89797 Query 32193 GTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 || || | || || |||||||| || ||||| || | || ||||| Sbjct 89798 CTTCGGTTCTCGTCTTGCCGGTGGTTCAGACGCTGCCAGTCCTCGATACAT 89848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306493373760