Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq11 318 7e-82
seq10 172 6e-38
seq54 163 3e-35
seq14 114 1e-20
seq31 113 5e-20
>seq11
Length=827760
Score = 318 bits (352), Expect = 7e-82
Identities = 1004/1533 (65%), Gaps = 57/1533 (4%)
Strand=Plus/Plus
Query 80355 AAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTC 80414
|||||| || || ||| ||||| | || | ||| | ||||| ||||| || |||
Sbjct 609677 AAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTC 609736
Query 80415 GTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATT 80474
||||| || | |||||||| ||||| || |||||||| || |||| | ||| || ||
Sbjct 609737 ATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGAGTT 609796
Query 80475 CCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCA---ACCCCAAC 80531
|| | ||||||| |||||| | ||| || | | | || | || | || |
Sbjct 609797 GCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGC-GTCCCAGTCCCAGAGATCCGAGG 609855
Query 80532 GCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAAC 80589
||| | || ||||||||||| ||| | ||||||| || | || || ||| || ||
Sbjct 609856 GCT-TAACATTCCACATGTCGTACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTAC 609914
Query 80590 GTCTCGTACGGGCCCTCCGTCTTGGCCAGCT-CACACGACTCCATAAGGGCCGCGTGATA 80648
|||| ||| || |||||| ||| |||| || ||| |||| ||||||| || || ||
Sbjct 609915 GTCTGGTAGGGACCCTCCTCCTTAGCCAACTGCAC-CGACATAGTAAGGGCAGCATGGTA 609973
Query 80649 AATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCC 80708
|| ||| || | |||||| | | || || | || ||||| | || ||
Sbjct 609974 GATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCG 610033
Query 80709 CATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTT 80768
| || ||| | || || || ||||| || |||| | || |||||||||||| |
Sbjct 610034 GAGAGCCAAGAAGGCATCCGCAAGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCAT 610093
Query 80769 GTT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGT 80827
||| | | || ||||||| | | ||||| ||| ||| |||| | ||| ||||
Sbjct 610094 GTTGCTGTTGCG-GGCCTCCTGGACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGT 610152
Query 80828 TGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT------TGGTTCC 80881
|||| |||||| | || || || || || ||||| |||||| | | |||
Sbjct 610153 TGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGACACCCTCGTTGT 610212
Query 80882 CCTTCACAAATGCCGG-AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCA 80940
| || |||| || ||||| || || ||||| || ||||| || ||||| ||||
Sbjct 610213 AGTCAACGAATGTGGGCAAGGCA-AGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGC 610271
Query 80941 TCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTC 81000
| | |||| | ||| || ||||| | || || || ||||||||||| |||
Sbjct 610272 GCGGAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTACGGATGGTACCCAGGTTCTTC 610331
Query 81001 TGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACC 81060
||||| ||| |||| ||| ||||||||| |||| | ||| | || ||||||
Sbjct 610332 TGGTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTT 610391
Query 81061 TGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCT 81120
|| | || ||||||||| | ||| | || | ||||| | |||||| |||||
Sbjct 610392 TGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTAAGAGTCTTGCGACCCTTGCCC 610451
Query 81121 -TCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGT 81178
|| | | ||||| |||| | ||||||| |||||| | ||| | | ||
Sbjct 610452 ATCTGTT-CGTACTTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGT-CGGCAAGAC 610509
Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238
| |||||||| || |||||||| || |||||| || || ||||| ||||||||
Sbjct 610510 CAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGA 610569
Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298
| ||||||||||| || || ||| ||||| ||| ||| |||| || | || |
Sbjct 610570 AGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCAT 610629
Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358
|||| |||| || | |||||| | || || || ||||| ||||| ||||| | ||
Sbjct 610630 GGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGG 610689
Query 81359 CGATCGACCCCTTGCGACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAA 81412
| | | || | |||| ||||||||||| |||||| || ||||| ||||
Sbjct 610690 CAAAAGCACC---GGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAA 610746
Query 81413 ATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACC 81472
| ||||| | ||| || | |||||| | || || || || || | || || |
Sbjct 610747 AGACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGC 610806
Query 81473 CCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTG 81530
| | ||||| | | || ||| ||||| |||||||| | | ||| || |||
Sbjct 610807 CGGTAGCGCGGATGCGGTGGACGTTG--AGACCAATGCCACCAGCCATCTTGGAGATCAT 610864
Query 81531 AGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAA 81590
|| || || | ||| || ||||| |||||||| || | ||||||||| | |
Sbjct 610865 TGCGCAGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAG 610924
Query 81591 GAAACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCG 81648
||| || |||| || | |||| | | || || ||||| ||||| || | |||
Sbjct 610925 GAAGCAAGAAGACAGCT--GTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCG 610982
Query 81649 TGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCA 81708
||| |||| | | | |||||||||| ||||| || ||||||| || | ||||
Sbjct 610983 TGAGTGAAGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCA 611042
Query 81709 CCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG-----CCTGCGT 81763
|| || || | ||| |||||||| | ||||| |||||| ||||| | |||
Sbjct 611043 CCCCAGATGCCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCG 611102
Query 81764 TC----------AGGTAC-ATCTTCTGCAAAGTCTTGATGCCGAAGTAACCGAACCCGTA 81812
|| |||||| ||| ||| ||| ||||||| ||||||||| | | | |
Sbjct 611103 TCAAGCTTCAGGAGGTACGATC-TCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAA 611161
Query 81813 GTCGCGTTCGCTGTCGATCACAGCATCTAGCTC 81845
|||||| ||| | |||| ||| || |||||
Sbjct 611162 GTCGCGGTCGTAGACGATGGCAGAGTCAAGCTC 611194
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || ||||| ||||||||||||||||| || || ||||||||| | ||||
Sbjct 609351 GCCTGTGTGCGCAGGTAGTACATGCCCGTCTTCAGACCGAGCTTCCAGCCAGCGAAGTGC 609410
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| ||| ||| | | || |||| || |||| |||||| || ||||| |||||
Sbjct 609411 ATGCTGGTGATCTTGCCCATAGTCGGGTCCTTCATGTGGATGTTAAGGGACTGCGACTGG 609470
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT 80180
|||||| || ||||| || || |||||
Sbjct 609471 TCGATGAAGGCACCACGGTCGGCAGCCAT 609499
>seq10
Length=843860
Score = 172 bits (190), Expect = 6e-38
Identities = 167/215 (78%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| ||||| |||||||| || ||||| ||||||||||| ||||| ||| |
Sbjct 383768 GTCAAGACCCTTACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCTGATACCATCGAC 383827
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| |||| |||||||||||||| || || ||||| || ||||| || | ||
Sbjct 383828 AATGTCAAGTCTAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAGCAACGCTTGATC 383887
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|||||||| ||||| || ||||||| || || || | ||||| || |||||||||||
Sbjct 383888 TTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCGGACTACAACATCCAAAAGGAA 383947
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| ||||| | || | ||||| || |||||
Sbjct 383948 TCCACCCTTCACTTGGTGCTCCGTCTCCGTGGTGG 383982
Score = 161 bits (178), Expect = 1e-34
Identities = 176/231 (76%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| ||||||||| | || || ||||| ||||| | |||||||||||
Sbjct 384212 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACAATTACGTTGGAGGTTGAGTCTTCG 384271
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | ||| | || || || ||||||||||| || || || || |||
Sbjct 384272 GACACGATTGACAATGTTAAGTCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGATCAG 384331
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||||| ||||||||||| |||||| | ||||| | ||| ||||| ||| || || ||
Sbjct 384332 CAGCGTCTCATTTTTGCTGGAAAGCAATTGGAGGACGGTCGCACCCTGAGC-GATTACAA 384390
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| || || ||||| || ||| | ||||| || || || ||
Sbjct 384391 CATCCAGAAGGAGTCAACGCTTCACCTCGTCCTCCGTCTGCGTGGCGGTCA 384441
Score = 159 bits (176), Expect = 4e-34
Identities = 157/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || ||||| ||||| ||||| ||||| || | || ||||| |
Sbjct 383501 ACCGGCAAGACCATCACTCTGGAGGTCGAGTCCTCTGATACTATCGACAACGTGAAGTCC 383560
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| ||||||||||||||||| || ||||| |||||||||||||| || || ||||| |||
Sbjct 383561 AAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTTATCTTCGCTGGCAAG 383620
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| || ||||| | ||| ||||| | ||||| ||| | || ||||| ||||| |||||
Sbjct 383621 CAGCTTGAGGACGGTCGCACCCTCTCCGACTACAATATTCAGAAGGAGTCCACCCTTCAC 383680
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
| || | ||||| || |||||
Sbjct 383681 TTGGTGCTCCGTCTCCGTGGTGG 383703
Score = 149 bits (164), Expect = 7e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | || || ||||| || || || ||||| || |||
Sbjct 383984 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACAATCACGCTGGAGGTCGAATCATCG 384043
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || ||||| | || ||||||||||||||||| |||||||| ||||||
Sbjct 384044 GACACGATCGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 384103
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | ||||| || || ||||| || || |||| ||| || | | ||||| ||
Sbjct 384104 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCTGACTACAAC 384163
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| || |||||||| || ||| | ||||| || || ||
Sbjct 384164 ATTCAGAAGGAGTCAACTCTTCACCTTGTCCTTCGTCTGCGTGGAGG 384210
>seq54
Length=312047
Score = 163 bits (180), Expect = 3e-35
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| || ||||| || || || |||||||| || |||||||| |||||
Sbjct 98581 ATCATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCG 98640
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | ||| | ||| | || || |||||||||||||| || || || |||
Sbjct 98641 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 98700
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
|||||||| || || || || || ||||| |||||||| | || ||||| | |||||
Sbjct 98701 CAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTAC 98760
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| |||| ||||| |||||||| || || || ||||||| || |||||
Sbjct 98761 AACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTGCGTGGTGG 98810
>seq14
Length=768254
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || || ||||| ||||| |||||||| ||||| || | ||
Sbjct 490780 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCAGACACGATC 490721
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || |||||||||||||| || || || ||||||||||| |
Sbjct 490720 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTG 490661
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| || || || ||||| |||||||||| || ||||| | ||||| || |||| |||
Sbjct 490660 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 490601
Query 27595 G 27595
|
Sbjct 490600 G 490600
>seq31
Length=482729
Score = 113 bits (124), Expect = 5e-20
Identities = 201/291 (69%), Gaps = 2/291 (1%)
Strand=Plus/Plus
Query 31954 GATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTG 32013
|||| || ||| ||||| || ||| | || || || |||||| ||||| |||||
Sbjct 89559 GATAACATGCGATCCATCCCTTCCGTCGTCGATGGACTGAAGCCTGGTCAGCGTAAGGTT 89618
Query 32014 ATATACGCCTGCCTCAAGAAGAACCTG-TCGAGTGACATGAAGGTGGCGCAGCTGTCGGG 32072
|| |||||||| |||||| ||||||| || || || |||||| | | || | ||
Sbjct 89619 ATCTACGCCTGTTTCAAGAGGAACCTGGTCAAGGATCA-GAAGGTCGTTGAATTGGCCGG 89677
Query 32073 CTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGT 32132
||| | | ||||| ||| |||| |||||||| || | || || ||| ||||| |
Sbjct 89678 TTACATTTCCGAGCAGACGTCCTACCACCACGGTGAAGTCTCTCTTCAGCAGACCATCAT 89737
Query 32133 CAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACA 32192
|||||||||||||| || || | || ||| | |||| || ||||| || ||| |
Sbjct 89738 TGGTCTTGCTCAGAACTTCGTGGGCTCCAACAACATTAACTGTCTGGAGCCCTCCGGAAA 89797
Query 32193 GTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243
|| || | || || |||||||| || ||||| || | || |||||
Sbjct 89798 CTTCGGTTCTCGTCTTGCCGGTGGTTCAGACGCTGCCAGTCCTCGATACAT 89848
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570306493373760
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