Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq7 116 3e-21 >seq7 Length=993837 Score = 116 bits (128), Expect = 3e-21 Identities = 211/301 (70%), Gaps = 6/301 (2%) Strand=Plus/Plus Query 6727 GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786 ||||||||| ||| | ||||||| || || || |||||| | |||| ||| Sbjct 489879 GACGTAGAACTGGGCAAACATGTGGCATGGTGGCAGGGCCATCTTCTTTAAATCCGCCGG 489938 Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846 ||||||||||| | | ||| | | ||||| |||||| ||| | ||| ||| || Sbjct 489939 GTTCCACGCGCTGAGGAGGATGCGGCGGTCATACGGGTTCGTCTTGAGCTTGTGGATAAC 489998 Query 6847 GTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCC 6904 | | || |||||||| | || || |||| |||||||| ||| || | || ||||| Sbjct 489999 CT-CGGCAAGCTGGTCGACGCCTTGGCCCGTATAGTCCGTCTTGGCGTCGACG-TACTCG 490056 Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGA-GA 6963 || |||||||||| ||| |||||||| ||||| ||||| | |||||| | || ||| || Sbjct 490057 GCGCCAAAGTGTCGCCATTGGAACCCATAGACGGGGCCGAGGTCGCCGACTTCTCGATGA 490116 Query 6964 TGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 | || ||| | || || || || || || |||| ||||||| ||||| || || Sbjct 490117 GAGAGGCCGACGC-TATCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAAATCTTGACGCC 490175 Query 7024 C 7024 | Sbjct 490176 C 490176 Score = 116 bits (128), Expect = 3e-21 Identities = 211/301 (70%), Gaps = 6/301 (2%) Strand=Plus/Minus Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCC 34380 ||| || ||||| ||||||| |||| || || || || || || | ||| || | Sbjct 490176 GGGCGTCAAGATTTGGGACGGCAACGGCTCGCGCGAGTTCCTCGATA-GCGTCGGCCTCT 490118 Query 34381 ATC-TCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439 || ||| || | |||||| | ||||| ||||| |||||||| ||| |||||||||| | Sbjct 490117 CTCATCGAGAAGTCGGCGACCTCGGCCCCGTCTATGGGTTCCAATGGCGACACTTTGGCG 490058 Query 34440 CGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTA 34497 | ||||| || | || ||| |||||||| |||| || || | |||||||| || | | Sbjct 490057 CCGAGTA-CGTCGACGCCAAGACGGACTATACGGGCCAAGGCGTCGACCAGCTTGCCG-A 490000 Query 34498 CGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAA 34557 || ||| ||| | ||| |||||| ||||| | | ||| | | |||||||||| Sbjct 489999 GGTTATCCACAAGCTCAAGACGAACCCGTATGACCGCCGCATCCTCCTCAGCGCGTGGAA 489940 Query 34558 CCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT 34617 |||| |||| | |||||| || || || ||||||| | ||| |||||||| Sbjct 489939 CCCGGCGGATTTAAAGAAGATGGCCCTGCCACCATGCCACATGTTTGCCCAGTTCTACGT 489880 Query 34618 C 34618 | Sbjct 489879 C 489879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448259329402560