Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq7 116 3e-21
>seq7
Length=993837
Score = 116 bits (128), Expect = 3e-21
Identities = 211/301 (70%), Gaps = 6/301 (2%)
Strand=Plus/Plus
Query 6727 GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786
||||||||| ||| | ||||||| || || || |||||| | |||| |||
Sbjct 489879 GACGTAGAACTGGGCAAACATGTGGCATGGTGGCAGGGCCATCTTCTTTAAATCCGCCGG 489938
Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846
||||||||||| | | ||| | | ||||| |||||| ||| | ||| ||| ||
Sbjct 489939 GTTCCACGCGCTGAGGAGGATGCGGCGGTCATACGGGTTCGTCTTGAGCTTGTGGATAAC 489998
Query 6847 GTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCC 6904
| | || |||||||| | || || |||| |||||||| ||| || | || |||||
Sbjct 489999 CT-CGGCAAGCTGGTCGACGCCTTGGCCCGTATAGTCCGTCTTGGCGTCGACG-TACTCG 490056
Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGA-GA 6963
|| |||||||||| ||| |||||||| ||||| ||||| | |||||| | || ||| ||
Sbjct 490057 GCGCCAAAGTGTCGCCATTGGAACCCATAGACGGGGCCGAGGTCGCCGACTTCTCGATGA 490116
Query 6964 TGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023
| || ||| | || || || || || || |||| ||||||| ||||| || ||
Sbjct 490117 GAGAGGCCGACGC-TATCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAAATCTTGACGCC 490175
Query 7024 C 7024
|
Sbjct 490176 C 490176
Score = 116 bits (128), Expect = 3e-21
Identities = 211/301 (70%), Gaps = 6/301 (2%)
Strand=Plus/Minus
Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCC 34380
||| || ||||| ||||||| |||| || || || || || || | ||| || |
Sbjct 490176 GGGCGTCAAGATTTGGGACGGCAACGGCTCGCGCGAGTTCCTCGATA-GCGTCGGCCTCT 490118
Query 34381 ATC-TCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439
|| ||| || | |||||| | ||||| ||||| |||||||| ||| |||||||||| |
Sbjct 490117 CTCATCGAGAAGTCGGCGACCTCGGCCCCGTCTATGGGTTCCAATGGCGACACTTTGGCG 490058
Query 34440 CGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTA 34497
| ||||| || | || ||| |||||||| |||| || || | |||||||| || | |
Sbjct 490057 CCGAGTA-CGTCGACGCCAAGACGGACTATACGGGCCAAGGCGTCGACCAGCTTGCCG-A 490000
Query 34498 CGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAA 34557
|| ||| ||| | ||| |||||| ||||| | | ||| | | ||||||||||
Sbjct 489999 GGTTATCCACAAGCTCAAGACGAACCCGTATGACCGCCGCATCCTCCTCAGCGCGTGGAA 489940
Query 34558 CCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT 34617
|||| |||| | |||||| || || || ||||||| | ||| ||||||||
Sbjct 489939 CCCGGCGGATTTAAAGAAGATGGCCCTGCCACCATGCCACATGTTTGCCCAGTTCTACGT 489880
Query 34618 C 34618
|
Sbjct 489879 C 489879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448259329402560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |