Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq54 95.1 1e-14
seq10 87.8 2e-12
>seq54
Length=312047
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| || || ||| ||| || || || || || |||| || || || |||| ||
Sbjct 98793 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTC 98734
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| || || || || || || ||||||||||||| ||| | || ||| ||||||
Sbjct 98733 GAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 98674
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || |||| | | | || ||| ||||||||| || | |||||| | ||
Sbjct 98673 GATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTT 98614
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||||| || || || || ||||| |||||
Sbjct 98613 ACCCGTGAGGGTCTTCACGAAGATCTGCAT 98584
>seq10
Length=843860
Score = 87.8 bits (96), Expect = 2e-12
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || ||| ||| || || ||||| || |||| || || || |||| ||
Sbjct 383686 CACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACCGTCCTC 383627
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192
|||||| ||||| || || ||||||||||||||||||| || | | ||| ||||||
Sbjct 383626 AAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 383569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429542731172324
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |