Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq10 93.3 3e-14
seq54 84.2 1e-11
>seq10
Length=843860
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || || | || ||||| || || || | || ||||| || ||
Sbjct 384212 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACAATTACGTTGGAGGTTGAGTCTTCG 384271
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| |||| | || | | ||||| || || | || || |||||
Sbjct 384272 GACACGATTGACAATGTTAAGTCGAAGA-TCCAAGACAAGGAGGGCATCCCCCCTGATCA 384330
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || ||||| || || ||| |||| |||| ||||| | ||||||||||
Sbjct 384331 GCAGCGTCTCATTTTTGCTGGAAAGCAATTGGAGGACGGTCGCACCCTGAGCGATTACAA 384390
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 384391 CATCCAGAAGGAGTCAAC 384408
Score = 89.7 bits (98), Expect = 3e-13
Identities = 134/188 (71%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 23621 TCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTG 23680
|||| || ||||| || || || || ||||||||||| ||||| ||| | || || | |
Sbjct 383766 TCGTCAAGACCCTTACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCTGATACCATCG 383825
Query 23681 A-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTA 23739
| ||| | || | || ||| ||||| ||||| | || || ||||| || || ||
Sbjct 383826 ACAATGTCAAGTC-TAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAGCAACGCTTG 383884
Query 23740 ATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAA 23799
|| ||||| ||||| || || || || | |||||| | || |||||||| |||||
Sbjct 383885 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCGGACTACAACATCCAAAAG 383944
Query 23800 GAGTCCAC 23807
|| |||||
Sbjct 383945 GAATCCAC 383952
>seq54
Length=312047
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||||||||| || || ||||| || || || || || |
Sbjct 98584 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCGTCC 98643
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || || ||||| || || | || || || ||
Sbjct 98644 GACACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 98702
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| | || || ||||| || || || || |||| ||||| | ||| |||||
Sbjct 98703 GCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAA 98762
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 98763 CATCCAGAAGGAGTCCAC 98780
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338007342518384
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |