Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq54 143 6e-29
seq10 143 6e-29
seq276 107 5e-18
seq11 95.1 3e-14
>seq54
Length=312047
Score = 143 bits (158), Expect = 6e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || |||||||||||||| || || |||| ||||| |||| || ||
Sbjct 98805 ACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 98746
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| || |||||||| || || || |||||||| || || ||
Sbjct 98745 GCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCC 98686
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| ||| ||||||||||| || | ||||| || |
Sbjct 98685 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAG 98626
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| ||||| | || || | ||| | |||||
Sbjct 98625 GGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 98584
>seq10
Length=843860
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||||||||| ||||| || || || || | ||||| || | |||||| | ||||||
Sbjct 384195 AGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCT 384136
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || ||||| || | || || |||||||| ||||| || ||||||||
Sbjct 384135 TCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 384076
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| |||||| ||||| ||||| || | ||| || || | |||||| |||
Sbjct 384075 TGAATCTTGGACTTCACGTTGTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTC 384016
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || ||||| || || | ||| | |||||
Sbjct 384015 TTTCCAGTCAATGTCTTGACGAAGATCTGCAT 383984
Score = 118 bits (130), Expect = 3e-21
Identities = 139/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || ||||| || || || | |||||| |||| | || | || ||
Sbjct 383688 AGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACCGTCC 383629
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| |||||||||||||| || || |||||||| || ||||| ||||||||
Sbjct 383628 TCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 383569
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| |||||| ||||| || || |||| || || || | ||||| |||
Sbjct 383568 TGAATCTTGGACTTCACGTTGTCGATAGTATCAGAGGACTCGACCTCCAGAGTGATGGTC 383509
Query 225682 TTGCCCGT 225689
||||| ||
Sbjct 383508 TTGCCGGT 383501
Score = 118 bits (130), Expect = 3e-21
Identities = 139/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || |||||||| ||||||| ||||| || | | ||| | |||||
Sbjct 383967 AGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCC 383908
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||| | ||||| || || || || || |||||||||||
Sbjct 383907 TCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGGATGCCTTCCTTGTCC 383848
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| ||| |||||||| || |||| || || || | ||||| |||
Sbjct 383847 TGAATCTTAGACTTGACATTGTCGATGGTATCAGAGGACTCAACCTCGAGAGTGATGGTC 383788
Query 225682 TTGCCCGT 225689
||||| ||
Sbjct 383787 TTGCCAGT 383780
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||| || || || || || |||| ||||||||| || || | || ||
Sbjct 384423 AGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCC 384364
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | ||||| ||||| || || || || || || || || || || || |||||||||
Sbjct 384363 TCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCT 384304
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| || || ||||| || | || || || ||||| || |||
Sbjct 384303 TGGATCTTCGACTTAACATTGTCAATCGTGTCCGAAGACTCAACCTCCAACGTAATTGTC 384244
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || ||||| || || | ||| | ||||||
Sbjct 384243 TTTCCAGTCAACGTCTTGACGAAGATTTGCAT 384212
>seq276
Length=27860
Score = 107 bits (118), Expect = 5e-18
Identities = 192/276 (70%), Gaps = 7/276 (3%)
Strand=Plus/Plus
Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499
||| ||||||||||| ||| ||||| || | |||||||| |||||| || |
Sbjct 878 AACATTATATTTAATGTTTTCATTATTTTCAGGATTAATAGGTACAGCCTTTTCTGTGTT 937
Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATAT-TGAGTGGTAATAGCCAACTT 7557
||||| ||||||||| | | || ||| ||| |||| | || |||| ||| |
Sbjct 938 AATAAGATTAGAATTATCAGGACCAGGTGTACAATATATATCAGA--TAAT---CAATTA 992
Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617
|| || ||| ||||| || || || | | |||||||||||| | |||||||| |
Sbjct 993 TATAATAGTATAATTACAGCACACGCTATAATGATGATTTTCTTTATGGTTATGCCAGCA 1052
Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677
| ||||| ||||| || || | || | || ||| | | || | ||| ||||||||
Sbjct 1053 TTAATAGGTGGTTTTGGTAACTTCTTATTACCATTATTAGTAGGAGGTCCAGATATGGCA 1112
Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713
|| ||||| | || ||||||||||| |||||| ||
Sbjct 1113 TTCCCAAGATTAAATAATATAAGTTTCTGATTATTA 1148
>seq11
Length=827760
Score = 95.1 bits (104), Expect = 3e-14
Identities = 184/272 (68%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559
||||||||| | || || | || || ||||||| |||||||| |||| |||
Sbjct 610329 TTCTGGTTGCTTTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCG 610388
Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619
| |||||| |||| ||| || ||| || | ||| || || | ||| | | ||||
Sbjct 610389 GTTTGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTAAGAGTCTTGCGACCCTTG 610448
Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679
|| | |||||||| ||||| | |||| || || | |||||| ||| | |||
Sbjct 610449 CCCATCTGTTCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGA 610508
Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739
|| || || || ||||| | ||| |||| ||||| | |||| || |||||||||
Sbjct 610509 CCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATG 610568
Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771
||||| |||| |||||| || ||||||
Sbjct 610569 AAGAGATCAGGGATCCAAAGAGCAAGGAAAAG 610600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192522826940312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |