Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq7 87.8 1e-12
>seq7
Length=993837
Score = 87.8 bits (96), Expect = 1e-12
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557
|||||| || || || || | |||||||||||| || || || || ||||| || ||||
Sbjct 490050 GTACTCGGCGCCAAAGTGTCGCCATTGGAACCCATAGACGGGGCCGAGGTCGCCGACTTC 490109
Query 27558 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617
| || || ||| | || | || || | || |||||| ||||||| |||||
Sbjct 490110 TCGATGAGAGAGGCCGACGCTATCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAAATCTT 490169
Query 27618 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCT 27676
|| ||| |||| ||| ||| |||| ||||| |||||||||||||||||
Sbjct 490170 GACGCCCGCCTCGCTCAGCGGCAGAGAGGATGTGTTGCCCTC-GACGAACCACAGCAGCT 490228
Query 27677 CCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 27724
| | | |||||| | || ||||| | ||| || |||||||||||||
Sbjct 490229 CGGCAATGACGGC--ACGAAGGAAGACGCGCTTCGTAGTGAGGAGGGGAA 490276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369504732153788
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |