Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq11 132 7e-26 >seq11 Length=827760 Score = 132 bits (146), Expect = 7e-26 Identities = 432/669 (65%), Gaps = 8/669 (1%) Strand=Plus/Plus Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 |||||||| ||||| |||||||| | | |||||| || | | | |||| ||||| Sbjct 610509 CCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATG 610568 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 ||||||||||| ||||| ||||||| || || || |||| | ||||| || || Sbjct 610569 AAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCA 610628 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 ||||| ||||| | ||| || | | ||| | ||||| || || ||||| || Sbjct 610629 TGGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATG 610688 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | | | || || || || || || ||||| || | || | || ||||||||| | Sbjct 610689 GCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAG 610748 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 || | | ||| |||| |||||||| || || ||||| || || | ||| ||| || Sbjct 610749 ACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCG 610808 Query 78255 CTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCG 78314 | ||||| || | | | || || || || |||||||| || || | ||| Sbjct 610809 GTAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCG 610868 Query 78315 CAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAA 78374 || || | || ||||| |||||||| ||| ||| || |||||| | ||| || Sbjct 610869 CAGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAG 610928 Query 78375 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTA 78434 || ||||| || || || || || || || | ||| ||||| || || || Sbjct 610929 CAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTG 610988 Query 78435 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTA---TGTC-CCATTG 78490 || | || || | || ||||| || || || | || | |||| || | Sbjct 610989 AAGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCAG 611048 Query 78491 ATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATT 78550 ||| || || || |||||||| | ||| ||||| ||||| || | |||| | Sbjct 611049 ATG----CCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTC 611104 Query 78551 TATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 78610 | |||| | ||| ||| | ||||| || || || || || || | ||| ||||| Sbjct 611105 AAGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTC 611164 Query 78611 TCTCTCGTA 78619 | ||||| Sbjct 611165 GCGGTCGTA 611173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664041518720