Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq11 125 1e-23
>seq11
Length=827760
Score = 125 bits (138), Expect = 1e-23
Identities = 432/670 (64%), Gaps = 8/670 (1%)
Strand=Plus/Plus
Query 76549 ACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCAT 76608
|||||| || ||||| || ||||| | | ||| || || | | | || | |||||
Sbjct 610508 ACCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCAT 610567
Query 76609 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCC 76668
||||||||||| ||||| ||||||| || || || |||| | ||||| || ||
Sbjct 610568 GAAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCC 610627
Query 76669 TGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 76728
||||| ||||||| || || | | ||| | ||||| || || ||||| ||
Sbjct 610628 ATGGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGAT 610687
Query 76729 CGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATA 76788
|| | | |||| || || || || || ||||| || | || | |||||||||||| |
Sbjct 610688 GGCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAA 610747
Query 76789 AACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCC 76848
|| | | ||| |||| || ||||| || || ||||| || || | ||| ||| ||
Sbjct 610748 GACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCC 610807
Query 76849 ACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGC 76908
|| || || | || || || || || ||||| || ||||| | ||
Sbjct 610808 GGTAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGC 610867
Query 76909 ACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAA 76968
||| || | ||||| || || ||||| ||| || || |||||| | ||| ||
Sbjct 610868 GCAGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAA 610927
Query 76969 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGT 77028
|| ||||| || || || || || || || | ||||||||| || |||||
Sbjct 610928 GCAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGT 610987
Query 77029 GAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAAC-TGCT--TCTATATC-CCATT 77084
||| | || || | || ||||| || || || || ||| | | || ||
Sbjct 610988 GAAGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCA 611047
Query 77085 GATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTAT 77144
|||| || |||||||||||||| | ||| ||||| |||| || || |||| |
Sbjct 611048 GATG----CCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGT 611103
Query 77145 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 77204
| |||| | ||| ||| | ||||| || || || || || || | ||| ||||
Sbjct 611104 CAAGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGT 611163
Query 77205 CTCTTTCGTA 77214
| | |||||
Sbjct 611164 CGCGGTCGTA 611173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712929516399360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |