Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq54 129 1e-24 seq14 93.3 1e-13 seq10 87.8 4e-12 >seq54 Length=312047 Score = 129 bits (142), Expect = 1e-24 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || ||||| ||||| || ||||||||||| |||| | || | || || Sbjct 98795 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 98736 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| || | ||||||||| | | ||| || ||||| | Sbjct 98735 TCGAGCTGCTTT--CCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGT 98678 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || |||||| | || | | |||| || ||| || ||||| || |||| Sbjct 98677 CCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAG 98618 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || |||||||| ||||||||||||| |||||| Sbjct 98617 TCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 98584 >seq14 Length=768254 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | || | ||||| || || || ||||||||||| Sbjct 490602 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 490661 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | ||||||||| | | ||| || ||||| || || || || |||||| | || Sbjct 490662 AAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 490721 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | ||||||| ||| || ||||| ||||| || || ||||| || ||||||||||| Sbjct 490722 ATCGTGTCTGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 490780 >seq10 Length=843860 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||| || || || |||||||||||||| || | | ||| | Sbjct 383974 GAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCG 383915 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 ||||| || || || || || ||||| |||| | ||||| || | | ||| |||| Sbjct 383914 GCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGT-TGCTGATCAGGAGGGATGCCTT 383856 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| || ||||| || |||||| | || | | | || || ||| || || |||| Sbjct 383855 CCTTGTCCTGAATCTTAGACTTGACATTGTCGATGGTATCAGAGGACTCAACCTCGAGAG 383796 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | || || ||||| || || ||||| |||| Sbjct 383795 TGATGGTCTTGCCAGTAAGGGTCTTGACGA 383766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153812698735708