Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017- 01-13] 548 sequences; 64,848,627 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq10 168 1e-36 seq54 163 6e-35 seq14 147 5e-30 seq169 84.2 5e-11 >seq10 Length=843860 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| ||||| || || || | || || || || ||||||||||||| Sbjct 384211 ACCTCCACGCAGACGAAGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGA 384152 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| ||||| || || || || ||||| || |||||||| || ||||| || Sbjct 384151 CAAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGG 384092 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| | || ||| | ||||| |||||||| | |||||| Sbjct 384091 AATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATCGTGTCCGATGATTCGAC 384032 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 384031 CTCCAGCGTGATTGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 383984 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | ||| ||| ||||||||||||||||| | Sbjct 383983 ACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGA 383924 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || ||||||||||| ||||| || ||| || Sbjct 383923 GAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGG 383864 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || ||||| | || || | ||||| || || || | || || Sbjct 383863 GATGCCTTCCTTGTCCTGAATCTTAGACTTGACATTGTCGATGGTATCAGAGGACTCAAC 383804 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||||||||||| ||||| || || | ||||| |||| Sbjct 383803 CTCGAGAGTGATGGTCTTGCCAGTAAGGGTCTTGACGA 383766 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| || || || || || | ||| || || ||||||||||| || Sbjct 384439 ACCGCCACGCAGACGGAGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCGCT 384380 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || ||||| | ||| || || ||||| || | ||| || || ||| || Sbjct 384379 CAGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATCAGGGGG 384320 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||||||||| | || || | || || |||||||||| || || Sbjct 384319 GATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCAATCGTGTCCGAAGACTCAAC 384260 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || ||||| || ||||| ||||| ||||| || ||||| Sbjct 384259 CTCCAACGTAATTGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 384212 Score = 120 bits (132), Expect = 6e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | ||| || || || || |||||||| | Sbjct 383704 ACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGA 383645 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || ||||| || || || || || ||||| | ||| || ||||| || Sbjct 383644 GAGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGG 383585 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||||| | || ||| | |||||||| || || | ||||| Sbjct 383584 GATACCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATAGTATCAGAGGACTCGAC 383525 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || |||||||| ||||| || || Sbjct 383524 CTCCAGAGTGATGGTCTTGCCGGT 383501 >seq54 Length=312047 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | ||| || || |||||||||||||| | Sbjct 98811 ACCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 98752 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| ||||||| || || ||||| || Sbjct 98751 CAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 98692 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| ||||| || | || || Sbjct 98691 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCAC 98632 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||||||||| | ||||| ||||| |||||||| Sbjct 98631 CTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 98584 >seq14 Length=768254 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||||||||| || || || ||||| |||||| Sbjct 490602 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 490661 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || |||||| || || ||||||||||| |||||||| | || || | ||| Sbjct 490662 AAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 490721 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | ||||| || || || || ||||||||||||| ||||| ||||| Sbjct 490722 ATCGTGTCTGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 490780 >seq169 Length=88269 Score = 84.2 bits (92), Expect = 5e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 315667 ACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACA 315726 || ||||| |||| ||||| || |||| | || |||||||||| || ||||| | Sbjct 23046 ACACCACCCTCGAACTTCTTCAGGGCCTTGGACAGGGCACCGAGAGAGTCACGGTCGAGG 23105 Query 315727 AAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAGC-GGCGCCGAT 315785 ||||||| ||||| ||||| ||||| | ||| || | ||||| ||||| ||| | | Sbjct 23106 TAGTTGGTAGGCTCGTCAAGGACGATCAAGTGAGGGCGCTGCCA-AGAGCAGGCAGCAAG 23164 Query 315786 AACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATG 315833 |||| ||| | || ||||||||||| || || ||||| || || Sbjct 23165 GACGACCTTGACACGCTGGCCACCAGACAGACCGCGCATGCGGGAGTG 23212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046731850582392